View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_low_13 (Length: 274)
Name: NF4702_low_13
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 4937813 - 4937991
Alignment:
| Q |
8 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacc |
107 |
Q |
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| T |
4937813 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaataacaattagccaacacataatgatagatagatattcattcactaacc |
4937912 |
T |
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| Q |
108 |
caactatggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
186 |
Q |
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| T |
4937913 |
caactaaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
4937991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 4953522 - 4953700
Alignment:
| Q |
8 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaagaacaattagccaacacataatgatagatagatattcattcactaacc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953522 |
ggacatcatcatatcagttgggcttgtatacctaacaaaatgaagtaaaaaaaaacaattagccaacacataatgatagatagatattcattcactaacc |
4953621 |
T |
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| Q |
108 |
caactatggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
186 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953622 |
caactaaggacacaaaaattgattttgaatgtataaattctttaaaattggtttcaacataaaagtgatttacttttga |
4953700 |
T |
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