View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_low_17 (Length: 237)
Name: NF4702_low_17
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 51455080 - 51455301
Alignment:
| Q |
1 |
tttgctctattgttttttaatatgccttgtttgataattgggatgtagaccgaagttattgcacatattacacgtttggactttggttgatgaaatattg |
100 |
Q |
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| T |
51455080 |
tttgctctattgttctttaatatgccttgtttgataattgggatgtagaccgaagttattgcacatattacacgtttggactttggttgatgaaatattg |
51455179 |
T |
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| Q |
101 |
atcaaactatgcttttttgctgcctcttgttaaggtatcctaaactgaaagagagtgatattgccaaggcatgtcctgtgtgctgtgataattgcaattg |
200 |
Q |
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| T |
51455180 |
atcaaactatgcttttttgctgcctcttgttaaggtatcctaaactgaaagagagtgatattgccaaggcatgtcctgtgtgctgtgataattgcaattg |
51455279 |
T |
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| Q |
201 |
caaagcatgcttgcggtctttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
51455280 |
caaagcatgcttgcggtctttt |
51455301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 30207602 - 30207548
Alignment:
| Q |
160 |
attgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgc |
214 |
Q |
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| T |
30207602 |
attgccaaggcatgtccagggtgctgtggtaattgcaattgcaaagcatgcttgc |
30207548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 51479739 - 51479793
Alignment:
| Q |
161 |
ttgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcg |
215 |
Q |
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| T |
51479739 |
ttgccgaggcatgtccggtgtgctgtggtaattgcaattgcaaagcatgcttgcg |
51479793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 51496757 - 51496805
Alignment:
| Q |
167 |
aggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcg |
215 |
Q |
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| T |
51496757 |
aggcatgtccagtgtgctgtggtaattgcaattgcaaagcttgcttgcg |
51496805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 43160142 - 43160214
Alignment:
| Q |
140 |
ctaaactgaaagagagtgatattgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgctt |
212 |
Q |
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| T |
43160142 |
ctaaattgaaagaaagcgatgttgccgaggcatgtcctgtgtgttgtaataattgcaattgtaaagcgtgctt |
43160214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 4299358 - 4299405
Alignment:
| Q |
167 |
aggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgc |
214 |
Q |
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|||||||||| |||||||||| ||| ||||||||||||||||||||| |
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| T |
4299358 |
aggcatgtccggtgtgctgtggtaacagcaattgcaaagcatgcttgc |
4299405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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