View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_low_18 (Length: 237)
Name: NF4702_low_18
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 53853702 - 53853483
Alignment:
| Q |
17 |
actttgagtcttaatagtagtagtgttttaattttagttgattagagaactggaataatcaacatgtcaattcactcctaagatatcctcgtgttagaag |
116 |
Q |
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| T |
53853702 |
actttgagtcttaatagtagtagtgttttaatttcagttgattagagaactggaata-tcaacatgtcaattcactcctaagatatcctcgtgttagaag |
53853604 |
T |
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| Q |
117 |
acacttgaaacacaagatcaaatactcgccaccaagataacgtggccatacaagggaaatacaagaaatagactcgaaatcaaatccacgctggatacca |
216 |
Q |
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| T |
53853603 |
acatttgaaacacaagatcaaatactcgccaccaagataacgtggccatacaagggaaatacaagaaatagactcgaaatcaaatccacgctggatacca |
53853504 |
T |
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| Q |
217 |
aaaagtcctcacaacttatcc |
237 |
Q |
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||||||||||||||||||||| |
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| T |
53853503 |
aaaagtcctcacaacttatcc |
53853483 |
T |
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