View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_low_4 (Length: 455)
Name: NF4702_low_4
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_low_4 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 136 - 441
Target Start/End: Complemental strand, 13153917 - 13153609
Alignment:
| Q |
136 |
aagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga |
235 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13153917 |
aagaatcaaaattacatctatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga |
13153818 |
T |
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| Q |
236 |
ggacatgacaagaaa--gtttgttcaatgttaaaagctttcaagcttaacacactggnnnnnnnnnnnn-ggataagtcttggtaaactgacctatgagg |
332 |
Q |
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| T |
13153817 |
ggacatgtcaagaaattgtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgagg |
13153718 |
T |
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| Q |
333 |
acccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgt |
432 |
Q |
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| T |
13153717 |
acccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgt |
13153618 |
T |
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| Q |
433 |
ctccacagg |
441 |
Q |
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||||||||| |
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| T |
13153617 |
ctccacagg |
13153609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0999 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 136 - 440
Target Start/End: Complemental strand, 3180 - 2875
Alignment:
| Q |
136 |
aagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga |
235 |
Q |
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| T |
3180 |
aagaatcaaaattacatctatgatttatggtgtaagaaagaagatactaaaagttattgaatatatagaagatgtagtttgatcttactgcatgaagaga |
3081 |
T |
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| Q |
236 |
ggacatgacaagaaagtttgttcaatgttaaaagctttcaagcttaacacactgg-nnnnnnnnnnnnggataagtcttggtaaactgacctatgaggac |
334 |
Q |
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| T |
3080 |
ggacatgacaagaaagtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgaggac |
2981 |
T |
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| Q |
335 |
ccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct |
434 |
Q |
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| T |
2980 |
ccatgaaaacatggttatccaagaactaaattgtctattgatggatgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct |
2881 |
T |
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| Q |
435 |
ccacag |
440 |
Q |
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| T |
2880 |
ccacag |
2875 |
T |
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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 3762163 - 3762228
Alignment:
| Q |
21 |
gatcgaagtaggcataccgtcaaccactttacccaacaaaccttctta--ccccatcacacctccc |
84 |
Q |
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| T |
3762163 |
gatcgaggtaggcataccgtcgaccactttacccaacaaaccttcttaccccccatcacacctccc |
3762228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 13528944 - 13529008
Alignment:
| Q |
373 |
tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctcca |
437 |
Q |
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| T |
13528944 |
tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca |
13529008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 13618483 - 13618547
Alignment:
| Q |
373 |
tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctcca |
437 |
Q |
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| T |
13618483 |
tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca |
13618547 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 25367789 - 25367745
Alignment:
| Q |
373 |
tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaa |
417 |
Q |
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| T |
25367789 |
tgatggacgaattgacaagtgcaccaaatcgaaacaagtaataaa |
25367745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 11474405 - 11474492
Alignment:
| Q |
122 |
tctaatggtatagaaagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatg |
209 |
Q |
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||||||| |||||||| | ||||| |||| |||||||||||||||||| | || |||||||||||||||| |||| |||||||| |
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| T |
11474405 |
tctaatgatatagaaaaatgaaaaatgacatctatgatttatggtgtaagtatgagcaaactaaaaggtattgggtatacagaagatg |
11474492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 11474531 - 11474606
Alignment:
| Q |
207 |
atgtagtttgatcttactgcatgaagagaggacatgacaagaaagtttgttcaatgttaaaagctttcaagcttaa |
282 |
Q |
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| T |
11474531 |
atgtagtttactcttattgcatgaaaataggacaagaaaagaaagcatgttcaatgttaaaagatttcatgcttaa |
11474606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 23854063 - 23854113
Alignment:
| Q |
391 |
gtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagg |
441 |
Q |
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| T |
23854063 |
gtgcaccaaatcataacaagtaataaagtagtaaattattgtctccacagg |
23854113 |
T |
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