View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_low_5 (Length: 419)
Name: NF4702_low_5
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 51455057 - 51454641
Alignment:
| Q |
1 |
aagttaaacaaagtaaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455057 |
aagttaaacaaagtaaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccc |
51454958 |
T |
|
| Q |
101 |
tgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454957 |
tgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatata |
51454858 |
T |
|
| Q |
201 |
atgccaaactcaaacatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgtggacttgtggaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51454857 |
atgccaaactcaaacatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgaggacttgtggaa |
51454758 |
T |
|
| Q |
301 |
cctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcccccggcatcattatcaccttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
51454757 |
cctcatttttggtggtttccttctccacctttctctttctgccgcgtctctttctcaccggttgaaatgatgaagagccgccggcatcattatcaccttc |
51454658 |
T |
|
| Q |
401 |
accagcttcttcctttg |
417 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
51454657 |
accagcttcttcctttg |
51454641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 51496545 - 51496350
Alignment:
| Q |
1 |
aagttaaacaaagtaaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccc |
100 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
51496545 |
aagttaaacaaagtaaaacataagtaaataaagttgtaccagttgtttaaacatggtatgcaatatcttttccgtttgcattttgtgcatctaacaaccc |
51496446 |
T |
|
| Q |
101 |
tgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
196 |
Q |
| |
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||||||| || ||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
51496445 |
tgcccttgtcatttctctgacattgatggcacatcaaggattcctcttcgatccactgttgattgagaaacattaacagaatcacaattacataca |
51496350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 51479553 - 51479399
Alignment:
| Q |
15 |
aaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgttt |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
51479553 |
aaaacagaagtgatggaagttgtaccaattgtttaaacaaggtatgcaaaatcttttccgtttgcattttgtgcatctgacaaccctgcccttgtcattt |
51479454 |
T |
|
| Q |
115 |
ctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaa |
169 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||||||| |||||||| |
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|
| T |
51479453 |
ctctgacattgatggcacattaaggactcctctgcaatccactgttaattgaaaa |
51479399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 7996975 - 7996867
Alignment:
| Q |
118 |
tgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaac-agtaacagaaccacaattacat---acatataatgccaaactcaa |
213 |
Q |
| |
|
||||||||||| | | |||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |
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| T |
7996975 |
tgacattgatggctcgttaaggattcctcttcaatccaccgttgattgaaaaacaattaacagaatgacaattacatgcaacatataattccaaactcaa |
7996876 |
T |
|
| Q |
214 |
acatataaa |
222 |
Q |
| |
|
|||| |||| |
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|
| T |
7996875 |
acatgtaaa |
7996867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 30208492 - 30208553
Alignment:
| Q |
135 |
taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
196 |
Q |
| |
|
|||||| || |||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30208492 |
taaggacccatcttcaatcccctattgattgagaaacagtaacagaaccacaattacataca |
30208553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 30208335 - 30208464
Alignment:
| Q |
3 |
gttaaacaaagtaaaacagaagttaaggaagttgtac----caattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaac |
98 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||||| ||| ||| | |||| |||||||| || | |||| | |||||| |||||| | ||||| |
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| T |
30208335 |
gttaaacagaataaaacataagttaaggaagttgtacgtaccaacggttaatacaaagtatgcaaaatttcttccggtcgcatttcgtgcatttcacaac |
30208434 |
T |
|
| Q |
99 |
cctgcccttatcgtttctctgacattgatg |
128 |
Q |
| |
|
||||||||| || ||||| | ||||||||| |
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|
| T |
30208435 |
cctgcccttgtcatttcttttacattgatg |
30208464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 27395621 - 27395515
Alignment:
| Q |
61 |
caatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgtt |
160 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||| | || ||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27395621 |
caatatcttttccgtttgcatttggtgcatctgacaaccctgccactgtcatttctttgacattgatgacacattaaggactcctcttcaatccactgtt |
27395522 |
T |
|
| Q |
161 |
gattgaa |
167 |
Q |
| |
|
|||||| |
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|
| T |
27395521 |
tattgaa |
27395515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 43160133 - 43160047
Alignment:
| Q |
293 |
ttgtggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcc |
379 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||||||| || ||||||||||||||||||| |
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|
| T |
43160133 |
ttgtggaacctcattttcggtggtttccttctccgattttctctttctgccgcatttctttctctccggttgaaatgatgaagagcc |
43160047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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