View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4702_low_9 (Length: 290)
Name: NF4702_low_9
Description: NF4702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4702_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 439942 - 439784
Alignment:
| Q |
17 |
atgtatagttgtcaactaatcatatagccataatttcactatttaattcctctgtctcatacatgcggcgtttgatggagattttattctatcaatcaat |
116 |
Q |
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| T |
439942 |
atgtatagttgtcaactaatcatatagccataatttcactatttaattcct--gtctcatacatgcggcgtttgatggagattttattctatcaatcaaa |
439845 |
T |
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| Q |
117 |
atatctaattagcattccatcaaatgaacaacaataaccatcttctactcttctcaataag |
177 |
Q |
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| T |
439844 |
atatctaattggcattccatcaaatgaacaacaacaaccatcttctactcttctcaataag |
439784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 439760 - 439682
Alignment:
| Q |
199 |
ctaatgaaacttgaaactagcacagcttaccatgcttttataaaaataaaattgatattttttcaatcataaaatttga |
277 |
Q |
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| T |
439760 |
ctaatgaaacttgaaactagcacagcttaccatgcttttataaaaataaaattgatattttttcaatcataaaatttga |
439682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 8779127 - 8779060
Alignment:
| Q |
49 |
atttcactatttaattcctctgtctcatacatgcggcgtttgatggagattttattctatcaatcaatatatctaat |
125 |
Q |
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| T |
8779127 |
atttcattatttaattcctctgtttcatacatgcggc---------agattttattgtatcaatcaatatatctaat |
8779060 |
T |
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