View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703-Insertion-12 (Length: 86)
Name: NF4703-Insertion-12
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703-Insertion-12 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 8138916 - 8138838
Alignment:
| Q |
8 |
aaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgtgcatcccatcct |
86 |
Q |
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| T |
8138916 |
aaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgtgcatccaatcct |
8138838 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 7670743 - 7670824
Alignment:
| Q |
5 |
acaaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgcaagttggcatatgaagacatgtgcatcccatc |
84 |
Q |
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| T |
7670743 |
acaaaaaataaatttgatcataacaattggactttcaaaatcaagattgcaagttggcatatgaaggcatgtgcatcccatc |
7670824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 7708965 - 7709046
Alignment:
| Q |
5 |
acaaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgcaagttggcatatgaagacatgtgcatcccatc |
84 |
Q |
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| T |
7708965 |
acaaaaaataaatttgatcataacaattggactttcaaaatcaagattgcaagttggcatatgaaggcatgtgcatcccatc |
7709046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 7709603 - 7709522
Alignment:
| Q |
5 |
acaaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgcaagttggcatatgaagacatgtgcatcccatc |
84 |
Q |
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| T |
7709603 |
acaaaaaataaatttgatcataacaattggactttcaaaatcaagattgcaagttggcatatgaaggcatgtgcatcccatc |
7709522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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