View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703-Insertion-13 (Length: 363)
Name: NF4703-Insertion-13
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703-Insertion-13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Original strand, 37553915 - 37554271
Alignment:
| Q |
7 |
acatctaacccactagtacacgtttcagtggagatcgattaaaacttactatgaaattaaggcaaaggatacatgagtgaattttccagatattggttca |
106 |
Q |
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| T |
37553915 |
acatctaacccactagtacacgttccagtggagatcgattaaaacttactatgaaattaaggcaaaggatacatgagtgaattttccaaatattggttcc |
37554014 |
T |
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| Q |
107 |
ttgaatgatggcagagaatcacttcaaggaacggttatgcttaatttcccttaaaaggctagatatattaaaaggtgatgggttttggaagtaatgtaaa |
206 |
Q |
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| T |
37554015 |
ttgaatgatggcagagaatcacttcaaggaacggttatgcttaatttcccttaaaaggttagatctattaaaaggtgatggattttggaagtcatgtaaa |
37554114 |
T |
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| Q |
207 |
ggtgtattgatcggacctcccggtacggggaaaatgatgtctgcaaaggcagtttgcaaacgaagatgggacaagcttcatcaatgtatcttcgtccatc |
306 |
Q |
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| T |
37554115 |
ggtgtattgatcggacctcccggtacggggaaaatgatgtctgcaaaggcagtttgcaaacgaagatgggacaagcttcatcaatgtatcttcgtccatc |
37554214 |
T |
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| Q |
307 |
attagtggaatgttgttcggacaaagtgaaaagaacgttcgagctctatttttatta |
363 |
Q |
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| T |
37554215 |
attagtggaatgttgttcgaacaaagtgaaaagaacgttcgagctctgtttttatta |
37554271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 44934962 - 44935090
Alignment:
| Q |
83 |
gtgaattttccagatattggttcattgaatgatggcagagaatcacttcaaggaacggttatgcttaatttcccttaaaaggctagatatattaaaaggt |
182 |
Q |
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| T |
44934962 |
gtgactttttcagatattggtgctttggatgatgttaaagaatcacttcaagaagcggttatgcttc----cccttagaagaccagatctattcaaaggt |
44935057 |
T |
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| Q |
183 |
gatgggttttggaagtaatgtaaaggtgtattg |
215 |
Q |
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| T |
44935058 |
gatggggttctgaagccatgtaaaggtgtattg |
44935090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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