View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703-Insertion-14 (Length: 275)
Name: NF4703-Insertion-14
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703-Insertion-14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 19148120 - 19148403
Alignment:
| Q |
3 |
caacaataagaaatctccttccaagttccacaatcactgtaatgtaacaacacaaacaatccaaaattcacacatcagttaaacagattaccctaaccta |
102 |
Q |
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| T |
19148120 |
caacaataagaaatctccttccaagttctacaatcactgtaatgtaacaacacaaacaatccaaaattcacacatcagttaaacagattaccctaaccta |
19148219 |
T |
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| Q |
103 |
ttaaacaccgaca-----------cataaaaacctcaaataatttaattaagtaaaagtaattgaatttaactacacatgtgtcctaatatcagatagac |
191 |
Q |
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| T |
19148220 |
ttaaacaccgacacaacactgacacataaaaacctcaaataatttaattaagtaaaagtaattgagtttaactacacatgtgtcataatatcagatagac |
19148319 |
T |
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| Q |
192 |
acggacaccagacacaccatgtaattatgccacagacacgggcaccagacacgacactaaggtaactacacacatgccagagat |
275 |
Q |
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| T |
19148320 |
acggacaccagacacaccatgtaattatgccacagacacgggcaccagacacgacactaaggtaactacacacatgccagagat |
19148403 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 19147852 - 19147920
Alignment:
| Q |
19 |
ccttccaagttccacaatcactgtaatgtaacaacac--aaacaatccaaaattcacacatcagttaaa |
85 |
Q |
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| T |
19147852 |
ccttccaagttccacaatcgctgtaatgtaacaacacataaacaatccaaaactcacaaatcagctaaa |
19147920 |
T |
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