View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703-Insertion-2 (Length: 909)
Name: NF4703-Insertion-2
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 27844093 - 27844457
Alignment:
| Q |
8 |
ccaactgcacttcaatatccaataaacccctgacttcttttccagacttccaccaataaaacaaaagggtgctaacagatcaccttgcataagcccgcta |
107 |
Q |
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| T |
27844093 |
ccaactgcaccacaatatccaataaacccctgacctctcttccagacttccaccaataaaacaaaagggtactaacagatcaccttgcataagcccgcta |
27844192 |
T |
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| Q |
108 |
ctaattttcatctcttccatgggaatcccattcgccaataccaacaaattatccgaaaatacagaagccctcatccaacctcttcatttttcattgaagt |
207 |
Q |
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| T |
27844193 |
ctaattttcatctcttccatgggaatcccattcgccaataccaacaaattatccgaaaatacagaagccctcatccaacctcttcatttttcatcgaagt |
27844292 |
T |
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| Q |
208 |
tgaatctttaaagcatgtaatcccaaaaactccaacttaccaaatcgtaggctttctgaaattccaccgtagagatcatgcactcctttttagtgtcttt |
307 |
Q |
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| T |
27844293 |
tgaatctttaaagcatgtaatcccaaaaactccaacttaccaaatcgtaggctttctgaaattccaccgtagagatcatgcactcctttttagtctcttt |
27844392 |
T |
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| Q |
308 |
gaaaggatcattctatttcatcaatttcatttttgtatactcatcctcatggctgtttagaaata |
372 |
Q |
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| T |
27844393 |
gaaaggatcattctatttcatcaatttcatttttgtatactcatcctcatagctatatagaaata |
27844457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 730 - 876
Target Start/End: Original strand, 27844811 - 27844956
Alignment:
| Q |
730 |
ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatacttctttttaat |
829 |
Q |
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| T |
27844811 |
ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatatttctttttaat |
27844910 |
T |
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| Q |
830 |
aagaagcaagnnnnnnnattaaagaggtataaagggtacttgaaacc |
876 |
Q |
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| T |
27844911 |
aagaagcaag-ttttttattaaagaggtataacgggtacttgaaacc |
27844956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 487 - 522
Target Start/End: Original strand, 27844572 - 27844607
Alignment:
| Q |
487 |
atctttctatttgcggcatatcttgtttggtaaata |
522 |
Q |
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| T |
27844572 |
atctttctatttgcggcatatcttgtttggtaaata |
27844607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 655
Target Start/End: Original strand, 27844702 - 27844735
Alignment:
| Q |
622 |
tgaactcaatttccacctctaataattaatccat |
655 |
Q |
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| T |
27844702 |
tgaactcaatttccacctctaataattaatccat |
27844735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 868 - 909
Target Start/End: Original strand, 27846027 - 27846068
Alignment:
| Q |
868 |
cttgaaacccattagaacagtaatacatacatacacctctaa |
909 |
Q |
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| T |
27846027 |
cttgaaacgcattagaacaataatacatacatacacctctaa |
27846068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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