View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703-Insertion-3 (Length: 892)
Name: NF4703-Insertion-3
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703-Insertion-3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 870; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 870; E-Value: 0
Query Start/End: Original strand, 7 - 892
Target Start/End: Complemental strand, 37834583 - 37833698
Alignment:
| Q |
7 |
agattatatcccactcagtcaagctaatgaaaccagacacattaataatgttggatcggcatgtgaaccgtcaaaactccttggctattattcatcatgg |
106 |
Q |
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| T |
37834583 |
agattatatcccactcagtcaagctaatgaaaccagacacattaataatgttggatcggcatgtgaaccgtcaaaactccttggctattattcatcatgg |
37834484 |
T |
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| Q |
107 |
caacatatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcctgagatacaatccaataacatggaaataaatagtacttctc |
206 |
Q |
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| T |
37834483 |
caacatatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcctgagatacaatccaataacatggaaataaatagtacttctc |
37834384 |
T |
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| Q |
207 |
aacaatatgaggtaatggggcaaccttttagcagcaccattactaaacggcatcagaatggaagtcttatgcaaagtgtaggaaattggctggtattgga |
306 |
Q |
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| T |
37834383 |
aacaatatgaggtaatggggcaaccttttagcagcaccattactaaacagcatcagaatggaagtcttatacaaagtgtaggaaattggcaggtattgga |
37834284 |
T |
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| Q |
307 |
ttagttatacggcaaagaaatatgtgtcattctgatactggtctgtataagtactttaggcaacgactatttctgcaagtaaaattgatacttcatctgc |
406 |
Q |
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| T |
37834283 |
ttagttatacggcaaagaaatatgtgtcattctgatactggtctgtataagtactttaggcaacgactatttctgcaagtaaaattgatacttcatctgc |
37834184 |
T |
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| Q |
407 |
aattaatactcatttgtttgcattatttcatgtttatatagtatattgtttagttctaaatcaggatctattgtctgtttcatataagcttttgctttat |
506 |
Q |
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| T |
37834183 |
aattaatactcatttgtttgcattatttcatgtttatatagtatattgtttagttctaaatcaggatctattgtctgtttcatataagcttttgctttat |
37834084 |
T |
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| Q |
507 |
gtatgagtaactctttaacatttatctttttaattctctccatcaaactcatttaattgctaaaagctcaactttccatatgaacaggcaactggtttta |
606 |
Q |
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| T |
37834083 |
gtatgagtaactctttaacatttatctttttaattctctccatcaaactcatttaattgctaaaagctcaactttccatatgaacaggcaactggtttta |
37833984 |
T |
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| Q |
607 |
attccttaaccagttggctcctagatggtgatcattcagtctcaacatgtgagattagttataataacaacgaacaggaagaactgagaaagccatctac |
706 |
Q |
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| T |
37833983 |
attccttaaccagttggctcctagatggtgatcattcagtctcaacatgtgagattagttataataacaacgaacaggaagaactgagcaagccatctac |
37833884 |
T |
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| Q |
707 |
ttctaatgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattccctcccaagatcactttgacgactgtgtactgtgcccatct |
806 |
Q |
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| T |
37833883 |
ttctaatgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattccctcccaagatcactttgacgactgtgtactgtgcccatct |
37833784 |
T |
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| Q |
807 |
attttctgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagactcagaaattaaggtattctattttga |
892 |
Q |
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| T |
37833783 |
attttctgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagactcagaaattaaggtattctattttga |
37833698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 37843438 - 37843046
Alignment:
| Q |
12 |
atatcccactcagtcaagctaatgaaaccagacacattaataatgttggatcggcatgtgaaccgtcaaaactccttggctattattcatcatggcaaca |
111 |
Q |
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| T |
37843438 |
atatctcactcagtcaaactaatgaaaccaaatacattaacaatgttggattgacatgtgaactctcaaaagttcttggctttt---catcatggcaaga |
37843342 |
T |
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| Q |
112 |
tatcttggacaatactgctgcaagttatgacgagctttttcagccttcttttcctgagatacaatccaataacatggaaataaatagtacttctcaacaa |
211 |
Q |
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| T |
37843341 |
tatcttagaaaataaggctggaagtcataatgtgccttttcag---tcttttcctgaaaaagaacccaataacatggaaatcaatagtacttctcaagga |
37843245 |
T |
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| Q |
212 |
tatgaggtaatggggcaaccttttagcagcaccattactaaacggcatcagaatggaagtcttatgca-----aag-tgtaggaaattggctggtattgg |
305 |
Q |
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| T |
37843244 |
tatgagacaatggggcaacatttaaccatcagcattactaaacagcatgagaatagaagttttatacaagctgaagctgaaggaaattggcaggtatgtg |
37843145 |
T |
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| Q |
306 |
attagttatac------ggcaaagaaatatgtgtcattctgatactggtctgtataagtactttaggcaacgactatttctgcaagtaaaattgatactt |
399 |
Q |
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| T |
37843144 |
actagttatacttttatggtaaagaaatttgtgtcattctgatattggtctgtttaagtac-ttaggaaacaactatgtctgcaagtaaaattgatactt |
37843046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 713 - 892
Target Start/End: Complemental strand, 37842306 - 37842127
Alignment:
| Q |
713 |
tgcttattgggatacaattgaaagcgaaaatggattcgacagtacaattattccctcccaagatcactttgacgactgtgtactgtgcccatctattttc |
812 |
Q |
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| T |
37842306 |
tgcttattgggatacagttgaaagcgaaaatggtgttgacagtacaactattccttcccaggtgcacctggagaactatgtactggatccatctatttgc |
37842207 |
T |
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| Q |
813 |
tgtgatcatcttttcagcatcattaatatttctcctagctggacatttgaagactcagaaattaaggtattctattttga |
892 |
Q |
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| T |
37842206 |
tatgatcagcttttcagcatcattgattattccccaagttggacatttgaagactcggaaattgaggtattctattttga |
37842127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 485
Target Start/End: Complemental strand, 37843039 - 37842978
Alignment:
| Q |
424 |
ttgcattatttcatgtttatatagta-tattgtttagttctaaatcaggatctattgtctgtt |
485 |
Q |
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| T |
37843039 |
ttgcattatttcatgtt-acatagtaatattatttagttttaaatcaggatctatagtctgtt |
37842978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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