View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4703-Insertion-4 (Length: 741)

Name: NF4703-Insertion-4
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4703-Insertion-4
NF4703-Insertion-4
[»] chr7 (2 HSPs)
chr7 (8-91)||(30505909-30505992)
chr7 (153-227)||(30506052-30506126)
[»] chr6 (4 HSPs)
chr6 (8-91)||(7033761-7033844)
chr6 (8-91)||(7038061-7038144)
chr6 (153-227)||(7033625-7033699)
chr6 (153-227)||(7037925-7037999)
[»] chr4 (4 HSPs)
chr4 (8-91)||(1541059-1541142)
chr4 (8-91)||(1545357-1545440)
chr4 (153-227)||(1540923-1540997)
chr4 (153-227)||(1545221-1545295)
[»] chr1 (6 HSPs)
chr1 (8-91)||(26400692-26400775)
chr1 (8-91)||(26404990-26405073)
chr1 (8-91)||(28914335-28914418)
chr1 (153-232)||(28914194-28914273)
chr1 (153-227)||(26404854-26404928)
chr1 (153-227)||(26400556-26400630)
[»] chr5 (4 HSPs)
chr5 (8-91)||(17793181-17793264)
chr5 (8-91)||(17797479-17797562)
chr5 (153-227)||(17793045-17793119)
chr5 (153-227)||(17797343-17797417)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 30505909 - 30505992
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505909 aaacgtacaaatagaaaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 30505992  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 30506052 - 30506126
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  30506052 atatttaaaagattcaaaacagaagtaaaataaactctgcagacgtggcagcagttctaaacacaatagctaaca 30506126  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 7033844 - 7033761
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  7033844 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 7033761  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 7038144 - 7038061
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||    
T  7038144 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacaatagaatact 7038061  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 7033699 - 7033625
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  7033699 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7033625  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 7037999 - 7037925
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  7037999 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7037925  T

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Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 1541142 - 1541059
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  1541142 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 1541059  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 1545440 - 1545357
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  1545440 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 1545357  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 1540997 - 1540923
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    ||||||||||||||||||| |||| |||||| ||||| | | ||||||||||||||||||||||||||| |||||    
T  1540997 atatttaaaatattcaaaatagaattaaaatgaactcaacaaacgtggcagcagttctaaacacaatagttaaca 1540923  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 1545295 - 1545221
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  1545295 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 1545221  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 26400775 - 26400692
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  26400775 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 26400692  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 26405073 - 26404990
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  26405073 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 26404990  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 28914418 - 28914335
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  28914418 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 28914335  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 28914273 - 28914194
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaacaaaaac 232  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| ||||| ||||    
T  28914273 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaacagaaac 28914194  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 26404928 - 26404854
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  26404928 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26404854  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 26400630 - 26400556
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    ||||||||||||||||||| |||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  26400630 atatttaaaatattcaaaatagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26400556  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 17793264 - 17793181
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  17793264 aaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 17793181  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 17797562 - 17797479
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 91  Q
    |||| |||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  17797562 aaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 17797479  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 17793119 - 17793045
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  17793119 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17793045  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 17797417 - 17797343
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  17797417 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17797343  T

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