View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4703-Insertion-6 (Length: 682)
Name: NF4703-Insertion-6
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 512
Target Start/End: Original strand, 2478668 - 2479173
Alignment:
| Q |
7 |
attgtaaaccaataccctccaatagtggtggtcgttatggcgagaatatttcggtgagcaccggctacataagtggcacacgagcagtgaagggttgtgc |
106 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| || |
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| T |
2478668 |
attgtaaaccgataccctccaatggtggtggtcgttatggcaagaatattgcggtgagcactggctacataagtggcacacaagcagtgaagggttgggc |
2478767 |
T |
|
| Q |
107 |
ggatgaaaaaccacactttgataactattttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttgga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478768 |
ggatgaaaaaccacactttgataactatcttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttgga |
2478867 |
T |
|
| Q |
207 |
tgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcccccaggtaacattcctggccaattaccgtaccaataaggtctgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478868 |
tgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcccccaggtaacattcctggccaattaccgtaccaataaggtctgg |
2478967 |
T |
|
| Q |
307 |
ttcagatcaagaaagtgtatgaaataagtctataaaattttctttaataaattattttcatatatatttgctttcaatttaatttcatgatattcgttcg |
406 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478968 |
ttcagatcaagaaaatgtatgaaataagtctataaaattttctttaataaattattttcatatatatttgctttcaatttaatttcatgatattcgttcg |
2479067 |
T |
|
| Q |
407 |
ctttctcaccattgtaataattttatagttgtatgctattaatttgagtgatgggagctcacttgacttggtctcgtagtgtcacctagcttatgttgtt |
506 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2479068 |
ctttgtcaccattgtagtaattttatagttgtatgctattaacttgagtgatgtgagatcacttgacttggtctcgtagtgtcacctagcttatgttgtt |
2479167 |
T |
|
| Q |
507 |
cttatt |
512 |
Q |
| |
|
|||||| |
|
|
| T |
2479168 |
cttatt |
2479173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 2483172 - 2483508
Alignment:
| Q |
7 |
attgtaaaccaataccctccaatagtggtggtcgttatggcgagaatatttcggtgagcaccggctacataagtggcacacgagcagtgaagggttgtgc |
106 |
Q |
| |
|
|||||||||| || ||||| |||||||||| ||||| || ||||||||| ||||||||||||| |||| ||||| | | |||||||||| || || |
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| T |
2483172 |
attgtaaaccgatcccctctgatagtggtggccgttacggtgagaatattgcggtgagcaccggacacatcagtggaagaaaagcagtgaagttgtgggc |
2483271 |
T |
|
| Q |
107 |
ggatgaaaaaccacactttgataactattttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttgga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2483272 |
ggatgaaaaaccacactttgataactatcttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttgga |
2483371 |
T |
|
| Q |
207 |
tgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcccccaggtaacattcctggccaattaccgtaccaataaggtctgg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
2483372 |
tgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcccccaggtaatattcctggccaattaccgtaccaataaggagtgg |
2483471 |
T |
|
| Q |
307 |
ttcagatcaagaaagtgtatgaaataagtctataaaat |
344 |
Q |
| |
|
|||| ||||||||| || ||||||||||||| |||||| |
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|
| T |
2483472 |
ttcatatcaagaaaatg-atgaaataagtctttaaaat |
2483508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 511 - 677
Target Start/End: Original strand, 2479237 - 2479403
Alignment:
| Q |
511 |
tttgaaccactaatcggttccaccgtcgaattccaaaagcttgggatggtttttggtttgtcttttgaatattcg-tatatatattgatagt-atttagt |
608 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
2479237 |
tttgaaccactaatcgtttccaccgtcgaattccaaaagcttgggattgtttttggtttgtcttttgaatattcgttatatatattgatagtgatttagt |
2479336 |
T |
|
| Q |
609 |
tctcttgatttg-tatgttgggtgggtgctctattgaatgtcgccgttttttattttggggtttgcaaga |
677 |
Q |
| |
|
|||||||||||| |||||| ||| | |||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2479337 |
tctcttgatttgttatgtt-ggttgttgctctattgaatgtcgccgttttttattt--gggtttgcaaga |
2479403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 44 - 289
Target Start/End: Original strand, 2486387 - 2486635
Alignment:
| Q |
44 |
tggcgagaatatttcggtgagcaccggctacataagtggcacacgagcagtgaagggttgtgcggatgaaaaaccacactttgataactattttaacaaa |
143 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | ||||||| ||||| ||||| || ||||| |||| | |
|
|
| T |
2486387 |
tggcgagaatattgcggtgagcaccggctacataagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactca |
2486486 |
T |
|
| Q |
144 |
tgttttgatggt---gaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacat |
240 |
Q |
| |
|
||| |||||||| ||||| || |||| ||| |||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
2486487 |
tgtattgatggtcatgaatgccaccattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcat |
2486586 |
T |
|
| Q |
241 |
ttgttacttgtaattattatcccccaggtaacattcctggccaattacc |
289 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||| ||||||||||||| |
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|
| T |
2486587 |
ttgttacttgcaattatgatccccctggtaacattgctggccaattacc |
2486635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 30 - 293
Target Start/End: Original strand, 2470855 - 2471118
Alignment:
| Q |
30 |
agtggtggtcgttatggcgagaatatttcggtgagcaccggctacataagtggcacacgagcagtgaagggttgtgcggatgaaaaaccacactttgata |
129 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||| |||| || | ||||||||| ||| | ||| || | ||||||| |||| |
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|
| T |
2470855 |
agtggtggccgttatggcgagaatattgcggtgagcaccggctacaagagtgtcagagatgcagtgaagatttgggtggaggaggagccacactatgatc |
2470954 |
T |
|
| Q |
130 |
actattttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataa |
229 |
Q |
| |
|
||||| |||| |||| ||| ||||||||||| ||||| ||||||||| | ||| | |||| |||| |||||||||||||||||| |||| |||| |
|
|
| T |
2470955 |
actataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataa |
2471054 |
T |
|
| Q |
230 |
tggtggaacatttgttacttgtaattattatcccccaggtaacattcctggccaattaccgtac |
293 |
Q |
| |
|
||| || ||||| ||||||| |||||| | || || ||||||||| |||| |||||||||||| |
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|
| T |
2471055 |
tggaggcacattcattacttgcaattatgacccacctggtaacattgctggtcaattaccgtac |
2471118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 512 - 621
Target Start/End: Original strand, 2483700 - 2483807
Alignment:
| Q |
512 |
ttgaaccactaatcggttccaccgtcgaattccaaaagcttgggatggtttttggtttgtcttttgaatattcgtatatatattgatagt-atttagttc |
610 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||| |
|
|
| T |
2483700 |
ttgaaccactaatcgcttctgccgtcgaattccaaaagtttgggattgtttttggtttgtcttttgaatattcgt---tatattgatagtgatttggttt |
2483796 |
T |
|
| Q |
611 |
tcttgatttgt |
621 |
Q |
| |
|
|||| |||||| |
|
|
| T |
2483797 |
tcttaatttgt |
2483807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 2474269 - 2474328
Alignment:
| Q |
197 |
acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta |
256 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||| |||||||| ||||||| ||||| |
|
|
| T |
2474269 |
acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta |
2474328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 2470003 - 2470057
Alignment:
| Q |
202 |
ttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta |
256 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||||| ||||||| ||||| |
|
|
| T |
2470003 |
ttggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaatta |
2470057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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