View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703-Insertion-8 (Length: 530)
Name: NF4703-Insertion-8
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 200 - 530
Target Start/End: Complemental strand, 55076942 - 55076612
Alignment:
| Q |
200 |
tggaggggacacaagttaattacctttgattgtgattgtggttttgattggagcggaatgtcttctacgtaatatagagcaaaggaagaaacgagagcga |
299 |
Q |
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| T |
55076942 |
tggaggggacgcaagttaattacctttgattgtgattgtggttttgattggagcggaatgtcttcaacgtaatatagagcaaaggaagaaacgagagcga |
55076843 |
T |
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| Q |
300 |
gaaggaatattgataagaagaaacatgttttgagattagcgcaaaagacatcgcaagctttagtttgggtgaaaggaaacatgtgatagagtttgctgaa |
399 |
Q |
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| T |
55076842 |
gaaggaatattgataagaagaaacatgttttgagattagcgcaaaagacatcgcaagctttagtttgggtgaaaggaaacatgtgatagagtttgctgaa |
55076743 |
T |
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| Q |
400 |
agagccggcggcataaccaaggatatttcccacggccatgaagaaagagaacatggcattgcccattctcattcgacggtgatcaccggcagcaaggtca |
499 |
Q |
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| T |
55076742 |
agagccggcggcataaccaaggatatttcccacggccatgaagaaagagaacatggcattgcccattctcattctacggtgatcaccggcagcaaggtca |
55076643 |
T |
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| Q |
500 |
ccaaggaaggcacgacatggtccttgaagca |
530 |
Q |
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| T |
55076642 |
ccaaggaaggcacgacagggtccttgaagca |
55076612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 55077136 - 55076966
Alignment:
| Q |
8 |
ttcacgacccatccaatcagtgtcgaacaagaaaaatgggaaccatgctacccaatttatagcggttactatcattagcatccacattggtttctttaat |
107 |
Q |
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| T |
55077136 |
ttcacgacccatccaatcagtatcgaacaagaaaaatgggaaccatgctacccaatttatagcggttactatcattagcatccacattggtttctttaat |
55077037 |
T |
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| Q |
108 |
ccactaaaagcacttaacaactccccgaagcagccgacgtcatcctataaattatcaacattgactattgt |
178 |
Q |
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| T |
55077036 |
ccactaaaagcacttaacaactccccgaagcagccgacgtcatcctataaattacaaacattgacaattgt |
55076966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 401 - 530
Target Start/End: Original strand, 15125312 - 15125441
Alignment:
| Q |
401 |
gagccggcggcataaccaaggatatttcccacggccatgaagaaagagaacatggcattgcccattctcattcgacggtgatcaccggcagcaaggtcac |
500 |
Q |
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| T |
15125312 |
gagccagcagcataaccaaggacattaccgacggccatgaaaaaagagaacatcccattgccaattctcattcgacggtgatcaccaccagcgaggtcac |
15125411 |
T |
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| Q |
501 |
caaggaaggcacgacatggtccttgaagca |
530 |
Q |
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| T |
15125412 |
caatgaaggcacgacaaggtccttgaagca |
15125441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 15124852 - 15124933
Alignment:
| Q |
13 |
gacccatccaatcagtgtcgaacaagaaaaatgggaaccatgctacccaatttatagcggttactatcattagcatccacat |
94 |
Q |
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| T |
15124852 |
gacccatccaatcagtgtcgaacaagaagaacggaaaccatgcaacccaattgatcgcggtaaccaacatcagcatccacat |
15124933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 10932644 - 10932546
Alignment:
| Q |
9 |
tcacgacccatccaatcagtgtcgaacaagaaaaatgggaaccatgctacccaatttatagcggttactatcattagcatccacattggtttctttaat |
107 |
Q |
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| T |
10932644 |
tcacggcccatccagtcagtgtcgaacaagaagaacgggaaccacgcgatccagttcacggctgttactaacatcaatatccacattggtctctttaat |
10932546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 438
Target Start/End: Original strand, 43665606 - 43665688
Alignment:
| Q |
356 |
gctttagtttgggtgaaaggaaacatgtgatagagtttgctgaaagagccggcggcataaccaaggatatttcccacggccat |
438 |
Q |
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| T |
43665606 |
gcttttgttttggtgaacggaaacacgtgaaagagtttgctgtaagcaccggcggcgtaaccgaggatgttaccgacggccat |
43665688 |
T |
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