View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4703_high_14 (Length: 253)
Name: NF4703_high_14
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3571262 - 3571512
Alignment:
| Q |
1 |
tcatggaaggtatcta--aataaatgcttgaaaaatctattagaatgttcaccggttcaacccaaataacttttaatccgtttaacaaaa-ataatataa |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
3571262 |
tcatggaaggtatctataaataaatgcttgaaaaatctattagaatgttcaccggttcaacccaaataacttttaatctatttaacaaaataaaatataa |
3571361 |
T |
|
| Q |
98 |
atattcttaaagcgagttaaaattaggtgatacaaatctattttaatatgtcaagatgatgttgagtgaattgatattaac-------atgact--cttt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
3571362 |
atattcttaaagcgagttaaaattaggtgatacaaatctattttaaaatgtcaagatgatgttgagtgaattaatattaactgactcgctgactcgcttt |
3571461 |
T |
|
| Q |
189 |
aagaatatctcggttttgatttatagaatcatccatatgatagatagttca |
239 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | ||||||||| |
|
|
| T |
3571462 |
aagaatatctcggttttgatttataaaatcatccatataagggatagttca |
3571512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 3568128 - 3568292
Alignment:
| Q |
21 |
aatgcttgaaaaatctattagaatgttcaccggttcaacccaaataacttttaatccgtttaacaaaaataatataaatattcttaaagcgagttaaaat |
120 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||| |||| || | || |||| ||||| |||| ||||||||||||||| |||| |||||||| |
|
|
| T |
3568128 |
aatgcttgaaaaatttattagaatgtttaccacttcagcccacattaagttcaatctagttaaccaaaaaaatataaatattcttgaagcatgttaaaat |
3568227 |
T |
|
| Q |
121 |
taggtgatacaaatctattttaatatgtcaagatgatgttgagtgaattgatattaacatgactc |
185 |
Q |
| |
|
| |||||||||||| |||| | ||| |||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
3568228 |
catgtgatacaaatcaatttgattatatcaagatgatgttgagataatttatattaacacgactc |
3568292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University