View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4703_high_3 (Length: 516)

Name: NF4703_high_3
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4703_high_3
NF4703_high_3
[»] chr1 (8 HSPs)
chr1 (17-509)||(8138911-8139395)
chr1 (328-509)||(7499529-7499701)
chr1 (275-410)||(7502967-7503107)
chr1 (123-239)||(7499722-7499845)
chr1 (34-73)||(7670694-7670733)
chr1 (34-73)||(7708916-7708955)
chr1 (453-503)||(7502878-7502928)
chr1 (368-409)||(7503119-7503160)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 8138911 - 8139395
Alignment:
Q  17 atttttcgtacaatccgttttaagtaaatgtatcaaaatcaaaatctattataataaatcaaaattaaaactatttgatctctatttcgaatgctaagnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  8138911 atttttcgtacaatccgttttaagtaaatgtatcaaaatcaaaatctattataataaatcaaaattaaaactatttgatctctatttcgaatgctaagaa 8139010  T
Q  117 nnnnnntaatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctcatctaattgttt-atgtatgcactatcagttaatacatggctg 215  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8139011 aaaaaataatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctcatctaattgttttatgtatgcactatcagttaatacatggctg 8139110  T
Q  216 actttggaatgatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatc 315  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8139111 actttggaattatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatc 8139210  T
Q  316 ttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8139211 ttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttctatgaatgatgaatctgtgtttttg 8139310  T
Q  416 aagcgcatctgttgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctc 509  Q
    |||||||||||||||                 || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8139311 aagcgcatctgttgatttttttt---------tttagtctttgttactgaatgcatgcttgaatatcactgtttttggaatgatgtctctgctc 8139395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 328 - 509
Target Start/End: Complemental strand, 7499701 - 7499529
Alignment:
Q  328 gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt 427  Q
    |||||||||||  |||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||    
T  7499701 gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtg-ttttgaagctcatctgt 7499603  T
Q  428 tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctc 509  Q
    |||                 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  7499602 tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctc 7499529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 275 - 410
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
Q  275 tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt 371  Q
    |||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |   |  |||||||| ||||||| ||||||||||||||    
T  7503107 tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt 7503008  T
Q  372 ctgcaatc--atgatcatttccatgaatgatgaatctgtgt 410  Q
    ||||||||  ||||||| ||| |||||||||||||||||||    
T  7503007 ctgcaatcatatgatcacttctatgaatgatgaatctgtgt 7502967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 7499845 - 7499722
Alignment:
Q  123 taatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgtttatgtatgcactatcagttaatacatggctg 215  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |       ||||||||||||| ||||||||||| |||||||||||||||    
T  7499845 taatgggaaaaattattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatgcactatctgttaatacatggctg 7499746  T
Q  216 actttggaatgatgtctcagtttt 239  Q
      ||| ||||||||||||||||||    
T  7499745 gttttagaatgatgtctcagtttt 7499722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 7670733 - 7670694
Alignment:
Q  34 ttttaagtaaatgtatcaaaatcaaaatctattataataa 73  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7670733 ttttaagtaaatgtatcaaaatcaaaatctattataataa 7670694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 7708955 - 7708916
Alignment:
Q  34 ttttaagtaaatgtatcaaaatcaaaatctattataataa 73  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7708955 ttttaagtaaatgtatcaaaatcaaaatctattataataa 7708916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 503
Target Start/End: Complemental strand, 7502928 - 7502878
Alignment:
Q  453 tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct 503  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  7502928 tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct 7502878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
Q  368 atttctgcaatcatgatcatttccatgaatgatgaatctgtg 409  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||    
T  7503160 atttctgcaatcatgatcacttctatgaatgatgaatttgtg 7503119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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