View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_14 (Length: 296)
Name: NF4703_low_14
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 85 - 293
Target Start/End: Original strand, 45269991 - 45270199
Alignment:
| Q |
85 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
184 |
Q |
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| T |
45269991 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
45270090 |
T |
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| Q |
185 |
gcctcgctcctgctaatgacacccttataaaccctccactttaacctcctcgcaacatttgcccacgggcccgggttggcatactcttcaacgatacacg |
284 |
Q |
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| T |
45270091 |
gcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacg |
45270190 |
T |
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| Q |
285 |
tgttttcat |
293 |
Q |
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||||||||| |
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| T |
45270191 |
tgttttcat |
45270199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 45273553 - 45273699
Alignment:
| Q |
85 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
184 |
Q |
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|||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| | ||||||||||| || ||| ||||| || |
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| T |
45273553 |
aaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaatttgtta |
45273640 |
T |
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| Q |
185 |
gcctcgctcctgctaatgacacccttataaaccctccactttaacctcctcgcaacatt |
243 |
Q |
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|||||| ||||||||||||||| | |||| || ||||||| | ||||||||||||||| |
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| T |
45273641 |
gcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacatt |
45273699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 45281797 - 45281943
Alignment:
| Q |
85 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
184 |
Q |
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|||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| | ||||||||||| || ||| ||||| || |
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| T |
45281797 |
aaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaatttgtta |
45281884 |
T |
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| Q |
185 |
gcctcgctcctgctaatgacacccttataaaccctccactttaacctcctcgcaacatt |
243 |
Q |
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|||||| ||||||||||||||| | |||| || ||||||| | ||||||||||||||| |
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| T |
45281885 |
gcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacatt |
45281943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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