View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_17 (Length: 263)
Name: NF4703_low_17
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38269659 - 38269412
Alignment:
| Q |
1 |
attattaatcatctattatttttt-gaatttttgtttattattatcaggtttgcaaagatgtggtaagagctgcaggcttaggtggatcaattacttaag |
99 |
Q |
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| T |
38269659 |
attattaatcatctattatttttttgaatttttgtttattattatcaggtttgcaaagatgtggtaagagctgcaggcttaggtggatcaattacttaag |
38269560 |
T |
|
| Q |
100 |
acctgatttaaaaagaggaacattctcacaagaggaagaaaacctcattgttgaacttcatgcagttctggggaataggtaaatttcaactactaactca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38269559 |
acctgatttaaaaagaggaacattctcacaagaggaagaaaatctcattgttgaacttcatgcagttctggggaataggtaaatttcaactactaactca |
38269460 |
T |
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| Q |
200 |
gttcc-nnnnnnnnatcatctcctatggttaagcaatggagtgataag |
246 |
Q |
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| T |
38269459 |
gttcctttttttttatcatctcctatggttaagcaatggagtgataag |
38269412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 37962857 - 37962942
Alignment:
| Q |
45 |
caggtttgcaaagatgtggtaagagctgcaggcttaggtggatcaattacttaagacctgatttaaaaagaggaacattctcacaa |
130 |
Q |
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| T |
37962857 |
caggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaaagaggagcattctcacaa |
37962942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 45438003 - 45438131
Alignment:
| Q |
53 |
caaagatgtggtaagagctgcaggcttaggtggatcaattacttaagacctgatttaaaaagaggaacattctcacaagaggaagaaaacctcattgttg |
152 |
Q |
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| T |
45438003 |
caaagatgtggtaagagctgtaggcttaggtggattaattacttaaggcctgatttaaaaagaggtacattttcacaagaagaagaaaatctcatcattg |
45438102 |
T |
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| Q |
153 |
aacttcatgcagttctggggaataggtaa |
181 |
Q |
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|||||||| |||| || |||||||||||| |
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| T |
45438103 |
aacttcattcagtactagggaataggtaa |
45438131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 5690643 - 5690743
Alignment:
| Q |
65 |
aagagctgcaggcttaggtggatcaattacttaagacctgatttaaaaagaggaacattctcacaagaggaagaaaacctcattgttgaacttcatgcag |
164 |
Q |
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| T |
5690643 |
aagagatgcaggttaagatggataaattacttaacgcctgatttgaaaagaggagcattctcacaataagaagagaatttgatcattgaacttcatgcag |
5690742 |
T |
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| Q |
165 |
t |
165 |
Q |
| |
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| |
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|
| T |
5690743 |
t |
5690743 |
T |
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