View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_19 (Length: 255)
Name: NF4703_low_19
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 25954151 - 25953922
Alignment:
| Q |
20 |
aacaatgtttagattagataacatgtgtctcttttaatttagggagagtttgctgcccaattggatcacaaaaaactcgagaaattagtctctacaatta |
119 |
Q |
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|||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||| |
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| T |
25954151 |
aacaatgtttagatcagataacatgtatctcttctaatttagggagagtttgccgccgaattggatcacaaaaaactcgaaagattagtctctacaattg |
25954052 |
T |
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| Q |
120 |
cgcgtgcggatgatactcaatttacaac--caaaaaatattccttttcatatgtcccattcattacac--atatcgtcaaaatccttaaaatatcatttt |
215 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
25954051 |
tgcgtgcagatgatactcaatttacaacaaaaaaaaatattccttttcatttgtcccattcattacacatatatcgt-aaaatccttaaaatatcatttt |
25953953 |
T |
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| Q |
216 |
ggtataacaatgattttttcagtagaataat |
246 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
25953952 |
ggtataacaatgattttttcaatagaataat |
25953922 |
T |
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