View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_2 (Length: 578)
Name: NF4703_low_2
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Complemental strand, 36080020 - 36079475
Alignment:
| Q |
19 |
acttgactcttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcat |
118 |
Q |
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| T |
36080020 |
acttgactcttctttgcaatgtaataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcat |
36079921 |
T |
|
| Q |
119 |
gatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaatttgaagatcatattc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36079920 |
gatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaatttgaagatcatattt |
36079821 |
T |
|
| Q |
219 |
ttttgcacatataattgttccttgcacgtgtgacacatgcagggatgttacaattgcaagaggttttggtgctgttggtgatgaaaatctgttgttgtat |
318 |
Q |
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| T |
36079820 |
ttttgcacatataattgttccttgcacgtgtgacacatgcagggatgttacaattgcaagaggttttggtgctgttcgtgatgaaaatctgttgttgtat |
36079721 |
T |
|
| Q |
319 |
gtgtgcatgtgtaagatggataagaatgaggagttttttggagtgtaaatggcgttggatgcaggatatgaaggtggagaatggtttgaaagacattgga |
418 |
Q |
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| T |
36079720 |
gtgtgcatgtgtaagatggataagaatgaggagttttttggagtgtaaatggcgttggatgcaggatatgaaggtggagaatggtttgaaagacattgga |
36079621 |
T |
|
| Q |
419 |
aaaagttctcaaggggnnnnnnnnnnnnnnnnnnagaagaagaatatgaagttgttccaagaacagaaagagaaaatgttagagttgagaggagaaagga |
518 |
Q |
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| T |
36079620 |
aaaagttctcaaggggtgatgatgatgatgat---gaagaagaatatgaagttgttccaagaacagaaagagaaaatgttagagttgagaggagaaagga |
36079524 |
T |
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| Q |
519 |
caattttgtgatagtatccatcgtagcgttggtggagagtttgatgatg |
567 |
Q |
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| T |
36079523 |
caattttgtgatagtatccatcgtagcgttggtggagagtttgatgatg |
36079475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 36107872 - 36107695
Alignment:
| Q |
31 |
tttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcatgatgaaacatgt |
130 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| | || | | ||||||||||||| |||||||||||| |
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| T |
36107872 |
tttgcaatgttataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgatatcaactgaattgagatgaaacatgt |
36107773 |
T |
|
| Q |
131 |
caagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaatttgaa |
208 |
Q |
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| T |
36107772 |
caagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaatctgaa |
36107695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 21482607 - 21482435
Alignment:
| Q |
28 |
ttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcatgatgaaaca |
127 |
Q |
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|||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||||||| | | || | | | ||||||||||| |||||| || |
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| T |
21482607 |
ttctttccaatggtataataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgtaaattgacatcaactgaattgagatgaagca |
21482508 |
T |
|
| Q |
128 |
tgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattct |
200 |
Q |
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| T |
21482507 |
agtcaattataacaaaaggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcggattct |
21482435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 34971784 - 34971906
Alignment:
| Q |
42 |
ataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcatgatgaaacatgtcaagtataata |
141 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||| |||| | || | | | ||||||||||| | |||||||||||||||| |||| |
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| T |
34971784 |
ataataaatcttaccaagtgttgcacctgattcaacccatgttgttgattcttgtaaattgacatcaactgaattgaggtgaaacatgtcaagtacaata |
34971883 |
T |
|
| Q |
142 |
aaaggaacatctgatacatatga |
164 |
Q |
| |
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||||| |||||||||| |||||| |
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| T |
34971884 |
aaaggcacatctgataaatatga |
34971906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 36100616 - 36100557
Alignment:
| Q |
28 |
ttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgtt |
87 |
Q |
| |
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||||||| |||| |||||||| |||||||||||||||||| ||||||||||||| |||| |
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| T |
36100616 |
ttctttgaaatggtataataaatcttaccaagtgttgcaccagcttcaacccatgttgtt |
36100557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 36090474 - 36090515
Alignment:
| Q |
42 |
ataataaaccttaccaagtgttgcacctgcttcaacccatgc |
83 |
Q |
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| T |
36090474 |
ataataaatcttaccaagtattgcacctgattcaacccatgc |
36090515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 6838636 - 6838456
Alignment:
| Q |
28 |
ttctttgcaatgtgataataaaccttaccaagtgttgcacctgcttcaacccatgctgttccgttttcaacgtcaatatcaactgaatcatgatgaaaca |
127 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| | || | | | |||||| |||| ||||||||| |
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| T |
6838636 |
ttctttgcaatggtataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgacatcaacagaattgagatgaaaca |
6838537 |
T |
|
| Q |
128 |
tgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaatttgaa |
208 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||| |||||| | || || ||||| ||||| |||||||| |||| |
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| T |
6838536 |
tgtcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaa |
6838456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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