View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4703_low_20 (Length: 254)

Name: NF4703_low_20
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4703_low_20
NF4703_low_20
[»] chr1 (3 HSPs)
chr1 (14-254)||(8838323-8838564)
chr1 (14-102)||(42966502-42966591)
chr1 (174-244)||(42966603-42966673)
[»] chr8 (4 HSPs)
chr8 (15-252)||(42599196-42599434)
chr8 (95-246)||(6797371-6797522)
chr8 (123-253)||(9519947-9520077)
chr8 (14-64)||(6797524-6797574)
[»] chr3 (3 HSPs)
chr3 (14-155)||(47403284-47403426)
chr3 (23-246)||(38280974-38281198)
chr3 (91-145)||(53963263-53963317)
[»] chr2 (2 HSPs)
chr2 (14-246)||(6328162-6328395)
chr2 (58-249)||(6378547-6378739)
[»] chr6 (2 HSPs)
chr6 (90-177)||(7227587-7227674)
chr6 (93-224)||(7208577-7208706)
[»] chr5 (1 HSPs)
chr5 (14-79)||(8886238-8886303)
[»] chr4 (1 HSPs)
chr4 (100-167)||(33342905-33342972)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 8838323 - 8838564
Alignment:
Q  14 gagatgaactttcaagaggttttctgctacacggattctctctattgtgttcaaatccttaaagagctaaccc-tatatttcataagtatgctactttga 112  Q
    ||||||||||||||||||||||| || | |||  |||||||| ||||||||||||| |||||||||||||||| || |||| ||||||||||||| ||||    
T  8838323 gagatgaactttcaagaggttttatgttgcacaaattctctccattgtgttcaaattcttaaagagctaacccctagattttataagtatgctacattga 8838422  T
Q  113 ttcaagacatcaaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaaggaaacacttgtacatatttcctagctaagactgg 212  Q
    ||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||||  ||| || |||||||||||||||||||    
T  8838423 ttcaagacatcaaggacctcctcaatcttcattggctagcttccgttgatcacactcttcgagaaggaaacaactgttcagatttcctagctaagactgg 8838522  T
Q  213 tgcttcttctaccgcggagtatgttgttcacaccacccctcc 254  Q
    ||||||||||||| || ||||||||||||||||| |||||||    
T  8838523 tgcttcttctacctcgaagtatgttgttcacacctcccctcc 8838564  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 42966502 - 42966591
Alignment:
Q  14 gagatgaactttcaagaggttttctgctacacggattctctctattgtgttcaaatccttaaagagctaa-ccctatatttcataagtat 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||  |||||||||||||    
T  42966502 gagatgaactttcaagaggttttctgctacacggattctctccattttgttcaaatccttaaagagctaacccctggatttcataagtat 42966591  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 42966603 - 42966673
Alignment:
Q  174 agaaggaaacacttgtacatatttcctagctaagactggtgcttcttctaccgcggagtatgttgttcaca 244  Q
    |||||||||||  ||| || |||||||||||||||||||||||||||||||  | || |||||||||||||    
T  42966603 agaaggaaacaactgtgcagatttcctagctaagactggtgcttcttctacttcagattatgttgttcaca 42966673  T

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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 42599196 - 42599434
Alignment:
Q  15 agatgaactttcaagaggttttctgctacacggattctctctattgtgttcaaatccttaaagagctaaccc-tatatttcataagtatgctactttgat 113  Q
    ||||||||||| |||||||||||| ||||||||||| ||||  || ||||||||| |||||||||||||||| || |||| ||||||||||||  |||||    
T  42599196 agatgaacttttaagaggttttctactacacggattttctcctttatgttcaaattcttaaagagctaacccctagatttaataagtatgctaggttgat 42599295  T
Q  114 tcaagacatcaaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaaggaaacacttgtacatatttcctagctaagactggt 213  Q
    |||||| ||||||||||||||||||||||||| | |||||||| ||| || |||||||| ||||||||||| |||| ||||||| ||| ||||||  |||    
T  42599296 tcaagatatcaaggacctcctcaatcttgactggttagcttcctttgttcgcactcttctagaaggaaacaattgtgcatattttctaactaagatcggt 42599395  T
Q  214 gcttcttctaccgcggagtatgttgttcacaccacccct 252  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  42599396 gcttcttctacctcggagtatgttgttcacacctcccct 42599434  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 6797522 - 6797371
Alignment:
Q  95 ataagtatgctactttgattcaagacatcaaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaaggaaacacttgtacata 194  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||| ||| || |||||| |||||||||||||||||| |||||||||  ||| || |    
T  6797522 ataagtatgctacgttgattcaaaacatcaaggatctcctcaatcttaactggcaagcttctattgatcacactcttcgaaaaggaaacaaatgtgcaga 6797423  T
Q  195 tttcctagctaagactggtgcttcttctaccgcggagtatgttgttcacacc 246  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  6797422 tttcctagctaagactggtgcttcttctacttcagagtatgttgttcacacc 6797371  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 9519947 - 9520077
Alignment:
Q  123 caaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaaggaaacacttgtacatatttcctagctaagactggtgcttcttct 222  Q
    |||||| |||||||||||||||| |||| | ||||||||||||||| ||| |||||||||||  ||| || ||||||||||||||| ||||| |||||||    
T  9519947 caaggatctcctcaatcttgactagctaacctccattgatcacacttttcaagaaggaaacaactgtgcagatttcctagctaagattggtgtttcttct 9520046  T
Q  223 accgcggagtatgttgttcacaccacccctc 253  Q
    |||    ||||||||||||||||| ||||||    
T  9520047 accttatagtatgttgttcacacctcccctc 9520077  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 6797574 - 6797524
Alignment:
Q  14 gagatgaactttcaagaggttttctgctacacggattctctctattgtgtt 64  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  6797574 gagatgaactttcaagaggttttctgctacacgaattctctccagtgtgtt 6797524  T

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Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 47403284 - 47403426
Alignment:
Q  14 gagatgaactttcaagaggttttctgctacacggattctctctattgtgttcaaatccttaaagagctaa-ccctatatttcataagtatgctactttga 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  47403284 gagatgaactttcaagaggttttcagctacacggattctctctattgtgttcaaatccttaaagaactaatccctatatttcataagtatgctactttga 47403383  T
Q  113 ttcaagacatcaaggacctcctcaatcttgacttgctagcttc 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  47403384 ttcaagacatcaaggacctcctcaatcttgactggctagcttc 47403426  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 38280974 - 38281198
Alignment:
Q  23 tttcaagaggttttctgctacacggattctctctattgtgttcaaatccttaaagagctaaccc-tatatttcataagtatgctactttgattcaagaca 121  Q
    ||||| ||| |||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| || || |||||||||| |||| || |||||||||     
T  38280974 tttcatgagattttctgctacacggattttctccattgtgtttaaatctttaaagagctaacccctagatatcataagtatactacattaattcaagact 38281073  T
Q  122 tcaaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaaggaaacacttgtacatatttcctagctaagactggtgcttcttc 221  Q
    ||||||| ||| |||||||||||| | |||||||||| | |||||||||||||||||||||||  |||||| ||||  |  ||||||| | || ||||||    
T  38281074 tcaaggatctcatcaatcttgactggttagcttccatcggtcacactcttcgagaaggaaacaaatgtacaaattttttgactaagacagatgtttcttc 38281173  T
Q  222 taccgcggagtatgttgttcacacc 246  Q
    |||   ||||||||||| |||||||    
T  38281174 tactttggagtatgttgatcacacc 38281198  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 53963317 - 53963263
Alignment:
Q  91 tttcataagtatgctactttgattcaagacatcaaggacctcctcaatcttgact 145  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||    
T  53963317 tttcataagtatgttacgttgattcaagacattaaggatctcctcaatattgact 53963263  T

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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 6328162 - 6328395
Alignment:
Q  14 gagatgaactttcaagaggttttctgctacacggattctctctattgtgttcaaatccttaaagagctaa-ccctatatttcataagtatgctactttga 112  Q
    ||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||    
T  6328162 gagatgaactttcaagaggttttctactatacgaattctctccattgtgttcaaatccttaaagagttaacccctatatttcacaagtatgctacgttga 6328261  T
Q  113 ttcaagacatcaaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaaggaaacacttgtacatatttcctagctaagactgg 212  Q
    |||||||   |||||| ||||| ||| ||||||  ||||||||||||||||||||||||  ||||||||  |  |||  | |||| |||| || || |||    
T  6328262 ttcaagatgccaaggatctcctaaattttgactgactagcttccattgatcacactcttaaagaaggaagtaactgtgtagattttctagttatgattgg 6328361  T
Q  213 tgcttcttctaccgcggagtatgttgttcacacc 246  Q
    |||||||||||||   || |||||||||||||||    
T  6328362 tgcttcttctaccttagattatgttgttcacacc 6328395  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 58 - 249
Target Start/End: Complemental strand, 6378739 - 6378547
Alignment:
Q  58 ttgtgttcaaatccttaaagagctaacc-ctatatttcataagtatgctactttgattcaagacatcaaggacctcctcaatcttgacttgctagcttcc 156  Q
    |||||||||||||||||||||| |||   ||| ||||||| ||||| |||| |||||| ||||| | |||||  ||||||||||||||  | ||||||||    
T  6378739 ttgtgttcaaatccttaaagagttaaattctagatttcattagtatactacgttgatttaagactttaaggatttcctcaatcttgacgggttagcttcc 6378640  T
Q  157 attgatcacactcttcgagaaggaaacacttgtacatatttcctagctaagactggtgcttcttctaccgcggagtatgttgttcacaccacc 249  Q
    |||||||  ||||||||||||||||||| |||| || |||| |||| |||||||  || |||||||||||| |||||||||||||||||||||    
T  6378639 attgatcttactcttcgagaaggaaacagttgtgcagattttctagttaagactaatgtttcttctaccgcagagtatgttgttcacaccacc 6378547  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 7227674 - 7227587
Alignment:
Q  90 atttcataagtatgctactttgattcaagacatcaaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaa 177  Q
    ||||||| |||||||||| ||||||||||||||| | || |||||||| ||||| |  |||||||||||||||||||| ||| |||||    
T  7227674 atttcatgagtatgctacgttgattcaagacatctatgatctcctcaaccttgattgactagcttccattgatcacacccttggagaa 7227587  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 7208706 - 7208577
Alignment:
Q  93 tcataagtatgctactttgattcaagacatcaaggacctcctcaatcttgacttgctagcttccattgatcacactcttcgagaaggaaacacttgtaca 192  Q
    |||| |||||||||| ||||||||||||||| |||| |||||| | |||||||  || | ||||||||||||||| ||  ||||||  || | |||| ||    
T  7208706 tcatgagtatgctacgttgattcaagacatctaggatctcctcgaccttgactgtctggtttccattgatcacaccctcggagaag--aagagttgtgca 7208609  T
Q  193 tatttcctagctaagactggtgcttcttctac 224  Q
    ||||||||||||||   ||||| |||||||||    
T  7208608 tatttcctagctaaacttggtgattcttctac 7208577  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 8886303 - 8886238
Alignment:
Q  14 gagatgaactttcaagaggttttctgctacacggattctctctattgtgttcaaatccttaaagag 79  Q
    |||||||||||||||||| |||||||||||||   ||| ||| ||||| |||||||||||||||||    
T  8886303 gagatgaactttcaagagattttctgctacacatgttccctccattgttttcaaatccttaaagag 8886238  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 33342972 - 33342905
Alignment:
Q  100 tatgctactttgattcaagacatcaaggacctcctcaatcttgacttgctagcttccattgatcacac 167  Q
    ||||||||||| |||||| ||| ||||||| || |||||||||||||| ||| | |||||| ||||||    
T  33342972 tatgctacttttattcaatacaccaaggacatcttcaatcttgacttgttagttaccattggtcacac 33342905  T

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