View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_23 (Length: 244)
Name: NF4703_low_23
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 37453049 - 37452823
Alignment:
| Q |
18 |
tgattgtaatatatgtattatcattgttactcttctctcaatgataatacatatatgttttttcagtttaactttgctctcaattcacttaatactaatc |
117 |
Q |
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| T |
37453049 |
tgattgtaatatatgtattatcattgttactcttctctcaatgataatacatatatgttttttcagtttaactttgctctcaattcacttaatactaatc |
37452950 |
T |
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| Q |
118 |
cccttgctgttataagatgagttaaacaaactctaccaaattacggtcattagttgaaaaatcaaatgttgataaattcacctcggttttccatgcatgc |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37452949 |
cccttgctgttataagatgagttaaacagactctaccaaattacggtgattagttgaaaaatcaaatgttgataaattcacctcggttttccatgcatgc |
37452850 |
T |
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| Q |
218 |
aaggttatgattcaatactttattttc |
244 |
Q |
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| T |
37452849 |
atggttatgattcaatactttattttc |
37452823 |
T |
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