View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_4 (Length: 510)
Name: NF4703_low_4
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 200 - 496
Target Start/End: Complemental strand, 34640390 - 34640090
Alignment:
| Q |
200 |
agtcacttgataaggcattctgatatttgcatgctnnnnnnngctcacaggg-ctacggaagctaatccaacttgaagatttacatcatatttaaagtat |
298 |
Q |
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| T |
34640390 |
agtcacttgataaggcattctgatatttgcatgctaaaaaaagctcacaggggctacggaagctaatc-aacttgaagatttacatcatatttaaagtat |
34640292 |
T |
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| Q |
299 |
gcagtttaataataa----ctttatttttgaaggtggaggatgcacattaggagatcaccttgaagatttgatgcatttttgttggttgctaaaaagaag |
394 |
Q |
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| T |
34640291 |
gcagtttaataataaataactttatttttgaaggtggaggatgcacattaggagatcaccttgaagatttgatgcatttttgttggttgctaaaaagaag |
34640192 |
T |
|
| Q |
395 |
cacatgagtagatcaccttgaagagttgatgcatttttgttggtcgctgattttgttatcacattcaaaattttatgcatttttatttgttgaattgttg |
494 |
Q |
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| T |
34640191 |
cacatgagtagatcaccttgaagagttgatgcatttttgttggtcgctgattttgttatcacattcaaaattttatgcatttttatttgttgaattgttg |
34640092 |
T |
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| Q |
495 |
at |
496 |
Q |
| |
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|| |
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| T |
34640091 |
at |
34640090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 277 - 496
Target Start/End: Original strand, 41534358 - 41534577
Alignment:
| Q |
277 |
atttacatcatatttaaagtatgcagtttaataataactttatttttgaaggtggaggatgcacattaggagatcaccttgaagatttgatgcatttttg |
376 |
Q |
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| T |
41534358 |
atttacatcatatttaaagtatgcagtttaataataactttatttttgaaggtggaggatgcacattaggagatcaccttaaagatttgatgcatttttg |
41534457 |
T |
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| Q |
377 |
ttggttgctaaaaagaagcacatgagtagatcaccttgaagagttgatgcatttttgttggtcgctgattttgttatcacattcaaaattttatgcattt |
476 |
Q |
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||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
41534458 |
ttggttgctggaaagaagcacgtgagaagatcaccttgaagagttgatgcatttttcttggtttctgattttgttatcacattcaagattttatgcattt |
41534557 |
T |
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| Q |
477 |
ttatttgttgaattgttgat |
496 |
Q |
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|| |||||||||||| |||| |
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| T |
41534558 |
ttttttgttgaattgctgat |
41534577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 41533952 - 41534031
Alignment:
| Q |
31 |
tgtggtctacatgttctaattaaaaattggtgcttatattcattttcaggattgcaatatgtcttctcaaatcagtgaaa |
110 |
Q |
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| T |
41533952 |
tgtggtctacatgttctaattaaaaattggtgcttatattcattttcaggattgcaatatgtcttctcaaatcagtgaaa |
41534031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 41534289 - 41534345
Alignment:
| Q |
267 |
caacttgaagatttacatcatatttaaagtatgcagtttaataataactttattttt |
323 |
Q |
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| T |
41534289 |
caacttgaagatttacatcatatttaaagtatgcaatttaataataaatttattttt |
41534345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 28376312 - 28376378
Alignment:
| Q |
404 |
agatcaccttgaagagttgatgcatttttgttggtcgctgattttgttatcacattcaaaattttat |
470 |
Q |
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| T |
28376312 |
agatcaccttgaagagttgatgcatttttgttggttgctgattttgttatcaaattgaagattttat |
28376378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 28376309 - 28376350
Alignment:
| Q |
344 |
aggagatcaccttgaagatttgatgcatttttgttggttgct |
385 |
Q |
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| T |
28376309 |
aggagatcaccttgaagagttgatgcatttttgttggttgct |
28376350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 22800677 - 22800622
Alignment:
| Q |
320 |
ttttgaaggtggaggatgcacattaggagatcaccttgaagatttgatgcattttt |
375 |
Q |
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| T |
22800677 |
ttttgaaggtggatgatgcacatgaggagatcaccttgaagaattgatgctttttt |
22800622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Original strand, 4919899 - 4919936
Alignment:
| Q |
440 |
gctgattttgttatcacattcaaaattttatgcatttt |
477 |
Q |
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|||||||||||||||||||| || |||||||||||||| |
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| T |
4919899 |
gctgattttgttatcacattgaagattttatgcatttt |
4919936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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