View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_5 (Length: 452)
Name: NF4703_low_5
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 177 - 444
Target Start/End: Complemental strand, 7945060 - 7944797
Alignment:
| Q |
177 |
tctgaacattaagtatttaatatgagactcacataacttgtaaaacaagaaacaaacttgtacaacaagaannnnnnnnnnnnnnncaaacttgttcaat |
276 |
Q |
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| T |
7945060 |
tctgaacattgagtatttaatatgagactcacataacttgtaaaacaagaaacaaacttgtactacaagaaagagagagaaa----caaacttgttcaat |
7944965 |
T |
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| Q |
277 |
gcttttcatgtatcctttatacacattcccaaatccaccttctcccacaagacaatcagaaccgaagttgtttgttgcctcagcaatttcttcatatgtt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7944964 |
gcttttcatgtatcctttatacacattcccaaatccaccttctcccacaagacaatcagaaccgaagttgtttgttgcctcagcaatttcttcatatgtt |
7944865 |
T |
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| Q |
377 |
aatactttaacatcgttttttgcagctccatattttagtatttctgttgtaatttgtctatctctgct |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7944864 |
aatactttaacatcgttttttgcagctccatattttagtatttctgttgtaatttgtctatgtctgct |
7944797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 7945267 - 7945064
Alignment:
| Q |
18 |
tcatgtactcataaactaaaatcctttgatcatcttctacacaataaccaacaagcttcactaggtttggatgattcaccatactcaacattaaaacttc |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7945267 |
tcatgtactcgtaaactaaaatcctttgatcatcttctacacaataaccaacaagcttcactaggtttggatgattcaccatactcaacattaaaacttc |
7945168 |
T |
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| Q |
118 |
tgcaaaaaattctcttgttccctgattcccatccctgttcagagtcttcacagctacagtctgaacattaagtatttaatatgagactcacataacttgt |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
7945167 |
tgcgaaaaattctcttgttccctgattcccatccctgttcagagtcttcacagctacagtctgaacattgagtatttaatatgagactctcataacttgt |
7945068 |
T |
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| Q |
218 |
aaaa |
221 |
Q |
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|||| |
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| T |
7945067 |
aaaa |
7945064 |
T |
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