View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4703_low_6 (Length: 432)
Name: NF4703_low_6
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 38400070 - 38400481
Alignment:
| Q |
18 |
atcatgatgtatttcaacctattgagtgtgaaccaacgttacaaattgggtcggtgtttagtaatcttcattaaaaaataaatcatatgtttaagatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400070 |
atcatgatgtatttcaacctattgagtgtgaaccaacgttacaaattgggtcggtgtttagtaatcttcattaaaaaataaatcatatgtttaagatttt |
38400169 |
T |
|
| Q |
118 |
agttgtatatttttgacataaaattttgtttaagcttatgcagatatcaggctgatccaggatcagtggtggtgacagcagggccaagcatgaataacta |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400170 |
aattgtatatttttgacataaaattttgtttaagcttatgcagatatcaggctgatccaggatcagtggtggtgacagcagggccaagcatgaataacta |
38400269 |
T |
|
| Q |
218 |
catgggtggatggttacc------atgatgatgatgataattaaagctatataaagagagagtgtgaagcatgcatgcataaagatcaatctcactattc |
311 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400270 |
catgggtggatggttaccatgatgatgatgatgatgataattaaagctatataaagagagagtgtgaagcatgcatgcataaagatcaatctcactattc |
38400369 |
T |
|
| Q |
312 |
caactttcaattttatctcaaaggaaaagggaaataatttgtaatactatcatgtaatgtaattgacttaactagctatatcagtgtctacgtaccatgt |
411 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38400370 |
caactttcaattttatctcaaagcaaaagggaaataatttgtaatactatcatgtaatgtaattgacttaactagctatatcaatgtctacgtaccatgt |
38400469 |
T |
|
| Q |
412 |
aggcagaataat |
423 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38400470 |
aggcagaataat |
38400481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University