View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4703_low_7 (Length: 420)
Name: NF4703_low_7
Description: NF4703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4703_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 37452771 - 37452358
Alignment:
| Q |
1 |
atatatagggattaattttgtttagctaannnnnnn-atagaagaaagcttatgtgagttgggtaagaacattgaagttatggcggacctcaagactcaa |
99 |
Q |
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| T |
37452771 |
atatatagggattaattttgttcagctaattcttttgatagaagaaagcttatgtgagttgggtaagaacattggagttatggcggacctcaagattcaa |
37452672 |
T |
|
| Q |
100 |
atagaagtataaaattgacaaataactcattaataagctcgaggttcttttgctcagagcaagagttcgaatttatatcctcgcaattgaatgagtcaaa |
199 |
Q |
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| T |
37452671 |
atagaagtataaaattgacaaataattcattaataagctcgaggttcttttgcttagagcaagagttcgaatttatatcctcacaattgaatgagtcaaa |
37452572 |
T |
|
| Q |
200 |
tctaactgaatcaattactgttgacttatgtaacaaattaagatttgggttgctaaactaaatagtaaggtattgtttactattctaacaagattaatca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
37452571 |
tctaactgaatcaattactgttgacttatgtaacaaattaagatttaggttgctaaactaaatcgtaacgtattgtttactattctaacaagattaatc- |
37452473 |
T |
|
| Q |
300 |
tatatggtattcaaattatgaaaacttttcttcctttaatcacatggtattcaaattacgaaaatgtttcttccttctttttctatattttaatatttgt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37452472 |
-atatggtattcaaattatgaaaacttttcttcctttaatcacatggtattcaaattacgaaaatgtttcttccttctttttctatattttaatatttct |
37452374 |
T |
|
| Q |
400 |
cttcttttcacctatg |
415 |
Q |
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|||||||||||||||| |
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| T |
37452373 |
cttcttttcacctatg |
37452358 |
T |
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