View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704-Insertion-13 (Length: 383)
Name: NF4704-Insertion-13
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704-Insertion-13 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 47241801 - 47242176
Alignment:
| Q |
8 |
ggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaattaactataaca |
107 |
Q |
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| T |
47241801 |
ggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaattaactataaca |
47241900 |
T |
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| Q |
108 |
aatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaaggatgctgcccttcttgacaaatacaagtcatgta |
207 |
Q |
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| T |
47241901 |
aatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaaggatgctgcccttcttgacaaatacaagtcatgta |
47242000 |
T |
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| Q |
208 |
aaatcataacacattcttccaattcagccgacttgtaacccaaacattcacatagggatgaagtctgaaatagattcgcaacattaagtaccttgaaatg |
307 |
Q |
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| T |
47242001 |
aaatcataacacattcttccaattcagccgacttgtaacccagacattcacatagggatgaagtctgaaatagattcgcaacattaagtaccttgaaata |
47242100 |
T |
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| Q |
308 |
ttattgttttttagaattcaaatagattaaaatcaataacatcaaatatttacccaaggatgtactccaggccgga |
383 |
Q |
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| T |
47242101 |
ttattgttttttagaattcaaatagattaaaatcaataacatcaaatatttacccaaggatgtactccaggccgga |
47242176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 47248250 - 47248621
Alignment:
| Q |
8 |
ggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaattaactataaca |
107 |
Q |
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| T |
47248250 |
ggtatctctggcgatgaaggcaggtttgccacacattttaactgttccagaaaacgatttcaagtcaatgaacttgcaataataagaaataactataaca |
47248349 |
T |
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| Q |
108 |
aatgaaatgttaaaagttaaaacaatcaccttttgttgcttgtatttctccctaacagctttgaaggatgctgcccttcttgacaaatacaagtcatgta |
207 |
Q |
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| T |
47248350 |
aaagaattgtcaaaagttaaaacaatcaccttgttctgcttgtatttgtcacgaacagctttgaaggatcctgcctttcttgacatatacaaatcatgta |
47248449 |
T |
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| Q |
208 |
aaatcataacacattcttccaattcagccgacttgtaacccaaacattcacatagggatgaagtctgaaatagattcgcaacattaagtaccttgaaatg |
307 |
Q |
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| T |
47248450 |
aaatgataacacaatcttctaaattagccgatgtgtaacccaagcattcacacagggaaggagtctgcaatagattctgaacattaggtactttgaaata |
47248549 |
T |
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| Q |
308 |
ttattgttttttaga-attcaaatagattaaaatcaataacatcaaatatttacccaaggatgtactccaggccgga |
383 |
Q |
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| T |
47248550 |
tta-----ctctagataatcaaataaatcaatgtccataacaacaagtatttacccaaggatgtgctccaggccgga |
47248621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 125 - 294
Target Start/End: Original strand, 47253168 - 47253337
Alignment:
| Q |
125 |
taaaacaatcaccttttgttgcttgtatttctccctaacagctttgaaggatgctgcccttcttgacaaatacaagtcatgtaaaatcataacacattct |
224 |
Q |
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| T |
47253168 |
taaaacaatcaccttgtgttgcttgtatttctccctaacagctttcaatgatgcagcccttcttaccaaatacaaatcatgcaaaatcagaacacattcc |
47253267 |
T |
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| Q |
225 |
tccaattcagccgacttgtaacccaaacattcacatagggatgaagtctgaaatagattcgcaacattaa |
294 |
Q |
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| T |
47253268 |
tccaactcagcagatttgtaaaacaagcattcactcaaagatgaggtctgcaatagattctcaacattaa |
47253337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 47253396 - 47253431
Alignment:
| Q |
343 |
ataacatcaaatatttacccaaggatgtactccagg |
378 |
Q |
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| T |
47253396 |
ataacatcaaatatttaccaaaggatgtactccagg |
47253431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 47253069 - 47253135
Alignment:
| Q |
29 |
aggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcattaataagaa |
95 |
Q |
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| T |
47253069 |
aggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgcaataataagaa |
47253135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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