View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704-Insertion-3 (Length: 766)

Name: NF4704-Insertion-3
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704-Insertion-3
NF4704-Insertion-3
[»] chr2 (23 HSPs)
chr2 (8-597)||(41636146-41636736)
chr2 (598-765)||(12756846-12757012)
chr2 (622-765)||(45418598-45418741)
chr2 (622-765)||(8147366-8147510)
chr2 (622-765)||(771014-771157)
chr2 (622-765)||(44084612-44084755)
chr2 (620-765)||(8059342-8059487)
chr2 (622-763)||(41251645-41251786)
chr2 (622-766)||(42440001-42440145)
chr2 (622-765)||(16405615-16405758)
chr2 (626-765)||(35962734-35962873)
chr2 (622-763)||(6403815-6403956)
chr2 (626-765)||(18981635-18981774)
chr2 (622-765)||(31581631-31581774)
chr2 (622-763)||(17445052-17445191)
chr2 (622-765)||(32127150-32127293)
chr2 (635-764)||(2285890-2286019)
chr2 (626-744)||(2958131-2958248)
chr2 (626-765)||(26162711-26162847)
chr2 (635-733)||(4555250-4555350)
chr2 (622-721)||(26237972-26238071)
chr2 (622-733)||(7072589-7072704)
chr2 (627-686)||(34905969-34906028)
[»] chr5 (20 HSPs)
chr5 (622-765)||(33430336-33430479)
chr5 (622-765)||(37254656-37254799)
chr5 (622-766)||(17332559-17332703)
chr5 (622-763)||(12278871-12279012)
chr5 (622-765)||(31680382-31680525)
chr5 (624-762)||(31501728-31501866)
chr5 (620-765)||(10033940-10034085)
chr5 (622-765)||(13817992-13818135)
chr5 (625-763)||(16155015-16155153)
chr5 (627-765)||(39657515-39657653)
chr5 (637-766)||(16333884-16334013)
chr5 (626-766)||(43068896-43069036)
chr5 (622-763)||(26283329-26283470)
chr5 (626-760)||(36293635-36293769)
chr5 (622-759)||(1776391-1776528)
chr5 (622-763)||(39434711-39434852)
chr5 (630-763)||(19985962-19986095)
chr5 (622-758)||(3155647-3155783)
chr5 (626-765)||(36291390-36291529)
chr5 (622-733)||(28801302-28801415)
[»] chr4 (34 HSPs)
chr4 (622-764)||(3292906-3293048)
chr4 (626-762)||(42333788-42333924)
chr4 (622-762)||(43143596-43143736)
chr4 (622-765)||(6690244-6690387)
chr4 (622-765)||(30216751-30216894)
chr4 (624-765)||(44156668-44156809)
chr4 (626-765)||(48989347-48989486)
chr4 (622-765)||(50205086-50205229)
chr4 (622-756)||(10352902-10353036)
chr4 (622-765)||(25930723-25930866)
chr4 (622-763)||(20129325-20129466)
chr4 (635-762)||(35545981-35546108)
chr4 (622-765)||(36382355-36382497)
chr4 (620-766)||(26448066-26448211)
chr4 (629-765)||(29319714-29319850)
chr4 (626-766)||(29995991-29996131)
chr4 (635-762)||(28877262-28877389)
chr4 (622-763)||(26439290-26439431)
chr4 (622-763)||(34407295-34407436)
chr4 (622-763)||(43355919-43356060)
chr4 (622-758)||(30077647-30077783)
chr4 (622-763)||(13012203-13012344)
chr4 (622-762)||(17511245-17511386)
chr4 (622-763)||(47500788-47500929)
chr4 (642-766)||(1817752-1817876)
chr4 (662-765)||(6235575-6235678)
chr4 (626-765)||(40529034-40529173)
chr4 (685-762)||(13392893-13392970)
chr4 (685-762)||(13396032-13396109)
chr4 (622-733)||(30109971-30110084)
chr4 (626-733)||(48129985-48130087)
chr4 (635-700)||(6254572-6254637)
chr4 (624-707)||(45194193-45194276)
chr4 (622-689)||(27363376-27363443)
[»] chr7 (18 HSPs)
chr7 (622-766)||(35090183-35090327)
chr7 (622-765)||(34389065-34389208)
chr7 (638-765)||(38638245-38638372)
chr7 (635-765)||(37002153-37002283)
chr7 (636-765)||(26624775-26624904)
chr7 (622-766)||(8867739-8867883)
chr7 (622-765)||(3114105-3114248)
chr7 (598-765)||(36658173-36658339)
chr7 (622-765)||(5555502-5555645)
chr7 (622-765)||(33685579-33685722)
chr7 (622-765)||(36630831-36630974)
chr7 (626-765)||(40920012-40920151)
chr7 (622-763)||(14777118-14777259)
chr7 (622-765)||(8394140-8394283)
chr7 (622-765)||(43184477-43184620)
chr7 (622-765)||(7002740-7002883)
chr7 (622-765)||(7048611-7048754)
chr7 (678-733)||(10868514-10868571)
[»] chr6 (10 HSPs)
chr6 (622-765)||(28996745-28996888)
chr6 (622-765)||(18339121-18339264)
chr6 (624-758)||(29743300-29743434)
chr6 (623-766)||(33229344-33229487)
chr6 (622-765)||(34948767-34948910)
chr6 (620-765)||(13837834-13837979)
chr6 (622-763)||(398632-398773)
chr6 (622-689)||(24697902-24697969)
chr6 (624-703)||(31028435-31028514)
chr6 (621-654)||(3050093-3050126)
[»] chr3 (16 HSPs)
chr3 (622-765)||(45182996-45183139)
chr3 (622-765)||(11018221-11018364)
chr3 (622-764)||(6930904-6931046)
chr3 (622-765)||(27935193-27935336)
chr3 (622-758)||(19565517-19565653)
chr3 (622-765)||(33040968-33041111)
chr3 (626-763)||(6269437-6269574)
chr3 (626-763)||(19390165-19390302)
chr3 (622-758)||(45335890-45336025)
chr3 (622-762)||(6503581-6503721)
chr3 (622-762)||(34084134-34084274)
chr3 (626-763)||(22968455-22968592)
chr3 (622-763)||(39771805-39771946)
chr3 (622-765)||(40081750-40081891)
chr3 (626-765)||(35514285-35514420)
chr3 (629-733)||(5135291-5135397)
[»] chr8 (14 HSPs)
chr8 (622-762)||(34136837-34136977)
chr8 (622-765)||(16788034-16788177)
chr8 (622-763)||(23402123-23402264)
chr8 (622-762)||(4404023-4404163)
chr8 (629-761)||(9877242-9877374)
chr8 (625-765)||(15838304-15838443)
chr8 (622-765)||(3648803-3648946)
chr8 (622-766)||(36408566-36408710)
chr8 (622-765)||(29728395-29728538)
chr8 (639-766)||(42230971-42231096)
chr8 (623-733)||(3435285-3435397)
chr8 (622-763)||(39914530-39914670)
chr8 (623-762)||(2729208-2729347)
chr8 (630-700)||(40470567-40470637)
[»] chr1 (11 HSPs)
chr1 (622-765)||(17445328-17445471)
chr1 (622-764)||(35907567-35907709)
chr1 (622-765)||(3828999-3829141)
chr1 (626-765)||(321386-321525)
chr1 (620-765)||(42310950-42311095)
chr1 (622-765)||(7433460-7433603)
chr1 (622-763)||(26144270-26144411)
chr1 (622-763)||(32982067-32982208)
chr1 (629-733)||(41972314-41972420)
chr1 (636-733)||(33489716-33489815)
chr1 (624-713)||(23313255-23313345)
[»] scaffold0502 (1 HSPs)
scaffold0502 (622-765)||(5245-5388)
[»] scaffold0041 (1 HSPs)
scaffold0041 (626-765)||(52944-53083)
[»] scaffold0154 (1 HSPs)
scaffold0154 (622-763)||(31495-31636)
[»] scaffold0069 (1 HSPs)
scaffold0069 (620-763)||(17855-17998)
[»] scaffold2142 (1 HSPs)
scaffold2142 (622-763)||(537-678)
[»] scaffold0002 (1 HSPs)
scaffold0002 (622-763)||(480468-480609)


Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 597
Target Start/End: Complemental strand, 41636736 - 41636146
Alignment:
Q  8 atttatgattggtttgagttttcatacctcttaagagactctcatgctaagagcacactctcaagcacatatctttaacgcattctcaatgctattgttg 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  41636736 atttatgattggtttgagttttcttacctcttaagagactctcatgctaagaacatactctcaagcacatatctttaacgcattctcaatgctattgttg 41636637  T
Q  108 aagttttaatcgaccccacgtaattatatgggtaccatcatcacatatgtaaatttggttggtcctacaccgtacacattgacatagag---tca--gac 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||   |||  ||     
T  41636636 aagttttaatcgaccccacgtaattatatgggtcccatcatcacacatgtaaatttggttggtcctacaccgtacactttgacatagaggagtcaaagat 41636537  T
Q  203 ctgtgtttttatgaatagactgcgttactttcaaactgaaaaagtgaaactgaaattgttcacgtgttgtgttgtttgttcaacacttccactaacgtat 302  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  41636536 cagtgtttttatgaatagactgcgttactttcaaactaaaaaagtgaaactgaaattgttcacgtgttgtgttgtttgttcaacacttcaacaaacgtat 41636437  T
Q  303 agttatattgctttcaatatagagtgaatgaatgattcgatgaacacggctcttgtttcttgcatcttagaaaacttttaaaaaacgtaacaacatcact 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41636436 agttatattgctttcaatatagagtgaatgaatgattcgatgaacacgtgtcttgtttcttgcatcttagaaaacttttaaaaaacgtaacaacatcact 41636337  T
Q  403 tttgataatgatttagggttgggttttatcggagcttgagaaggaaaacaatgcatcgctagggaatcatttgatagaacctcatccaaggagagnnnnn 502  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         
T  41636336 tttgataacgatttagggttgggttttatcggagcttgagaaggaaaacaatgcatcgctagggaatcatttgatagaacctcatccaagaagagaaaaa 41636237  T
Q  503 nngtgtgnnnnnnnnnnnnnnnacttaagttgcttgaaaacgaggcc-taagttttggagcttggaatgtcaagtgaattattatgtggataaaca 597  Q
      |||||               ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41636236 aagtgtg-----tttcttttttacttaagttgcttgaaaacgaggccttaagttttgcagcttggaatgtcaagtgaattattatgtggataaaca 41636146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 598 - 765
Target Start/End: Complemental strand, 12757012 - 12756846
Alignment:
Q  598 caggggcggtttcaccgcccgggatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaa 697  Q
    ||||||||||||||||||||||   | |||||| || ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||    
T  12757012 caggggcggtttcaccgcccggcgac-cccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaa 12756914  T
Q  698 atttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12756913 atttgagcaatctgaaaattctcacacgcaaataagtctcggaattttatttagcacactattgacgg 12756846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 45418598 - 45418741
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  45418598 tcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 45418697  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  45418698 cacgcaaataggtctctgaattttatttagcacactattgacgg 45418741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 8147366 - 8147510
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctg-aaaattctc 720  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  8147366 tcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaaattctc 8147465  T
Q  721 acacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||    
T  8147466 acacgcaaatagatctcggaattttatttaacacactattgacgg 8147510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 771014 - 771157
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||| ||||||||||||||||||||| ||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  771014 tcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 771113  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  771114 cacgcaaataggtctcggaactttatttagcacattattgacgg 771157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 44084755 - 44084612
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  44084755 tcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 44084656  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
     ||||||||||||||| |||||||||||||||||||||||||||    
T  44084655 tacgcaaataggtctcagaattttatttagcacactattgacgg 44084612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 620 - 765
Target Start/End: Complemental strand, 8059487 - 8059342
Alignment:
Q  620 gatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattct 719  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||| ||||||||||||| |||| ||||||||||    
T  8059487 gatcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaatttgaaaattct 8059388  T
Q  720 cacacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  8059387 cacacacaaatcggtctcggaattttatttagcacacaattgacgg 8059342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 41251786 - 41251645
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  41251786 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 41251687  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  41251686 cacgtaaataggtcttggaattttatttagcacactattgac 41251645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 622 - 766
Target Start/End: Original strand, 42440001 - 42440145
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  42440001 tcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 42440100  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgga 766  Q
    ||||||||||||||| | |||||||||||||||||||||||||||    
T  42440101 cacgcaaataggtcttgcaattttatttagcacactattgacgga 42440145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 16405615 - 16405758
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||   ||| ||||| ||| || ||||||||||||| ||||||||||||| |||    
T  16405615 tcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaagaaaaatttggacaatctgaaaattgtca 16405714  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  16405715 cacgcaaataagtcttggaattttatttagcacactattgacgg 16405758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 626 - 765
Target Start/End: Original strand, 35962734 - 35962873
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| |||||||||||||||||||||||| |||||||||||   ||| ||||| |||||| ||||||| ||||||||||||||||||| ||||||     
T  35962734 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaattttgggcaatctgaaaattgtcacaca 35962833  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  35962834 caaataggtcttggaattttatttagcacactattgacgg 35962873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 6403956 - 6403815
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| ||||||  ||| ||||| ||| || ||||||||||||||||||||||||||| |||    
T  6403956 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtca 6403857  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  6403856 cacgtaaataggtcttggaattttatttggcacactattgac 6403815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 626 - 765
Target Start/End: Original strand, 18981635 - 18981774
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||| ||| | ||| |||||| |||||||||||||||||| | |||||| |||||||    
T  18981635 ccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaatttgggcaatttaaaaattgtcacacg 18981734  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  18981735 caaataggtcttggaattttatttagcacactgttgacgg 18981774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 31581774 - 31581631
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||| ||||| | ||||| |||||||| ||||||| || |||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  31581774 tcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 31581675  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  31581674 cacgcaaataggtcttggaattttatttagcacactattgacgg 31581631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 17445191 - 17445052
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||| |||| |||||||||||||||||  ||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  17445191 tcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 17445094  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  17445093 cacgtaaataggtcttggaattttatttagcacactattgac 17445052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 32127293 - 32127150
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||| ||||||||||||||||| || | |||||||||   ||| ||||| |||||| ||||||||||| ||||||||||||||| |||    
T  32127293 tcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaatttaggcaatctgaaaattgtca 32127194  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  32127193 cacgcaaatagatcttggaattttatttagcacactattgacgg 32127150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 635 - 764
Target Start/End: Original strand, 2285890 - 2286019
Alignment:
Q  635 atcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggt 734  Q
    ||||||||||||||||||||| | |||||| ||||||| ||| ||||| |||| | | |||||||||| |||||||||||||| ||||||||||||||||    
T  2285890 atcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaaggaaaaatttgagcaatctgaaaattgtcacacgcaaataggt 2285989  T
Q  735 ctcggaattttatttagcacactattgacg 764  Q
     | |||||||||||||||||||||||||||    
T  2285990 tttggaattttatttagcacactattgacg 2286019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 626 - 744
Target Start/End: Complemental strand, 2958248 - 2958131
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| |||||||||||| ||||||||||| ||||||||||| | ||| ||||| ||||||  ||||||||||||| |||||||||||| |||||||    
T  2958248 ccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagagaaaaatttgggtaatctgaaaattgtcacacg 2958150  T
Q  726 caaataggtctcggaattt 744  Q
    ||||||||||| |||||||    
T  2958149 caaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 626 - 765
Target Start/End: Complemental strand, 26162847 - 26162711
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    ||||||||  |||||||||||| ||||||| |  ||||||||||  | ||| |||||||||||| |||||||||||||||||||| |||||||||| ||     
T  26162847 ccgggctccttcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaaca 26162748  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||   |||||||||||| |||||||||    
T  26162747 caaataggtctcgga---ttatttagcacattattgacgg 26162711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 635 - 733
Target Start/End: Complemental strand, 4555350 - 4555250
Alignment:
Q  635 atcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggc--aatctgaaaattctcacacgcaaatag 732  Q
    ||||||||||||||||||| | ||||||||||||||    || |||||||||||| ||||||| |||||||  |||||||||||||||||||| ||||||    
T  4555350 atcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggcaaaatctgaaaattctcacacgtaaatag 4555251  T
Q  733 g 733  Q
    |    
T  4555250 g 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 622 - 721
Target Start/End: Original strand, 26237972 - 26238071
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggc-aatctgaaaattctc 720  Q
    |||||||||||| ||||||| |||||||| ||||||  ||| ||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||    
T  26237972 tcgcccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttgggcaaatctgaaaactctc 26238070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 733
Target Start/End: Complemental strand, 7072704 - 7072589
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatt--tacacacttacaagaagaaaaatttgggcaa--tctgaaaatt 717  Q
    |||||||||||| |||||||||||||  |||||| || ||||||||||| | |||   ||||||||| || |||||||  |||| |||  ||||||||||    
T  7072704 tcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacacacttataaaaagaaaatattggacaaattctgaaaatt 7072605  T
Q  718 ctcacacgcaaatagg 733  Q
    ||| |||| |||||||    
T  7072604 ctcgcacgtaaatagg 7072589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 34905969 - 34906028
Alignment:
Q  627 cgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacactta 686  Q
    ||||||| |||||||||||||||||||||  || |||||||||| | ||| |||||||||    
T  34905969 cgggctcgatcgataatttttgcacattaagcctaacccaaaagcccattaacacactta 34906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 33430336 - 33430479
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  33430336 tcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 33430435  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33430436 cacgcaaataggtctcggaattttatttagcacactattgacgg 33430479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 37254656 - 37254799
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  37254656 tcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 37254755  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  37254756 cacgcaaataggtctcggaattttatttagcacattattgacgg 37254799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 622 - 766
Target Start/End: Complemental strand, 17332703 - 17332559
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||    
T  17332703 tcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattttca 17332604  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgga 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17332603 cacgcaaataggtctcggaattttatttagcacactattgacgga 17332559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 12279012 - 12278871
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12279012 tcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 12278913  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12278912 cacgcaaataggtctcggaattttatttagcacactattgac 12278871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 31680382 - 31680525
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  31680382 tcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 31680481  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  31680482 catgcaaataggtctcggaattttatttagcacactattgacgg 31680525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 624 - 762
Target Start/End: Complemental strand, 31501866 - 31501728
Alignment:
Q  624 gcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcaca 723  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||    
T  31501866 gcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcgca 31501767  T
Q  724 cgcaaataggtctcggaattttatttagcacactattga 762  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  31501766 cgcaaataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 620 - 765
Target Start/End: Original strand, 10033940 - 10034085
Alignment:
Q  620 gatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattct 719  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |    
T  10033940 gatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt 10034039  T
Q  720 cacacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10034040 cacacgcaaataggtcttggaattttatttagcacactattgacgg 10034085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 13817992 - 13818135
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  13817992 tcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 13818091  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||| |||| |||||||||||||||||||||||    
T  13818092 cacgcaaataggtcttggaaatttatttagcacactattgacgg 13818135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 625 - 763
Target Start/End: Original strand, 16155015 - 16155153
Alignment:
Q  625 cccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacac 724  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| ||| || ||||||||||| ||||||||||||||| ||||||    
T  16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacac 16155114  T
Q  725 gcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  16155115 gcaaataggtcttggaattttatttagcacactattgac 16155153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 627 - 765
Target Start/End: Complemental strand, 39657653 - 39657515
Alignment:
Q  627 cgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgc 726  Q
    ||||||| || ||||||||||||||||||||| |||||||||||   ||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  39657653 cgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgc 39657554  T
Q  727 aaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  39657553 aaataggtcttggaattttatttagcacactattgacgg 39657515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 637 - 766
Target Start/End: Complemental strand, 16334013 - 16333884
Alignment:
Q  637 cgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtct 736  Q
    |||||||||||||||||||||  ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  737 cggaattttatttagcacactattgacgga 766  Q
     |||||||||||||||||||||||||||||    
T  16333913 tggaattttatttagcacactattgacgga 16333884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 626 - 766
Target Start/End: Original strand, 43068896 - 43069036
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||| ||| |    
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatg 43068995  T
Q  726 caaataggtctcggaattttatttagcacactattgacgga 766  Q
     ||||| ||||||||||||||||||||||||||||| ||||    
T  43068996 taaataagtctcggaattttatttagcacactattgccgga 43069036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 26283470 - 26283329
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| ||||||  ||| ||||| ||| || ||||||||||||||||||||||||||| |||    
T  26283470 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtca 26283371  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  26283370 cacgtaaataggtcttggaattttatttggcacactattgac 26283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 626 - 760
Target Start/End: Complemental strand, 36293769 - 36293635
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||| ||| |||||||||||||| ||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  36293769 ccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 36293670  T
Q  726 caaataggtctcggaattttatttagcacactatt 760  Q
     |||||||||| |||||||||||||||||||||||    
T  36293669 taaataggtcttggaattttatttagcacactatt 36293635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 622 - 759
Target Start/End: Complemental strand, 1776528 - 1776391
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||| |||||| |  ||||| ||||||| ||| ||||| |||||| |||||||||||||||||| |||||||| |||    
T  1776528 tcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtca 1776429  T
Q  722 cacgcaaataggtctcggaattttatttagcacactat 759  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1776428 cacgcaaataggtcttggaattttatttagcacactat 1776391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 39434711 - 39434852
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||||||| | ||| ||||| |||||| | ||||||||||||||||||||||||| |||    
T  39434711 tcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaatttgggcaatctgaaaattgtca 39434810  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    || | ||||||||||  |||||||||||||||||||||||||    
T  39434811 catgtaaataggtctttgaattttatttagcacactattgac 39434852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 630 - 763
Target Start/End: Original strand, 19985962 - 19986095
Alignment:
Q  630 gctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaa 729  Q
    |||| |||||||||||||||||||||||  ||||||||||||| |||  |||| |||||| |||||||||||||| ||||| |||||| |||||||||||    
T  19985962 gctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaatttgggtaatctaaaaattatcacacgcaaa 19986061  T
Q  730 taggtctcggaattttatttagcacactattgac 763  Q
    ||||||| | ||||||||||| ||||||||||||    
T  19986062 taggtcttgaaattttatttaacacactattgac 19986095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 622 - 758
Target Start/End: Complemental strand, 3155783 - 3155647
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||| ||||||| ||| |||||||||||||||| ||| ||||| ||||||| ||| ||||| ||| || ||||||||||||| ||||||||||||| |||    
T  3155783 tcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaagaaaaatttggacaatctgaaaattgtca 3155684  T
Q  722 cacgcaaataggtctcggaattttatttagcacacta 758  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  3155683 cacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 626 - 765
Target Start/End: Original strand, 36291390 - 36291529
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    ||||| || ||| ||||||||||||||||||| | |||| ||||||  ||| ||||| |||||| |||||||||||||||||||| |||||| | ||||     
T  36291390 ccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaatctcaaaattattacaca 36291489  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  36291490 caaataggtctcagaattttatttaacacactattgacgg 36291529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 622 - 733
Target Start/End: Original strand, 28801302 - 28801415
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttggg--caatctgaaaattct 719  Q
    |||||| ||||| ||||||||||||||||||||||| |||| ||||||| | ||| |||||||||||| ||||||||||||||   ||| ||||||||||    
T  28801302 tcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaattct 28801401  T
Q  720 cacacgcaaatagg 733  Q
    ||||||||||||||    
T  28801402 cacacgcaaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 9e-63; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 622 - 764
Target Start/End: Complemental strand, 3293048 - 3292906
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  3293048 tcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 3292949  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacg 764  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3292948 cacgcaaataggtctcggaattttatttagcacactattgacg 3292906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 626 - 762
Target Start/End: Complemental strand, 42333924 - 42333788
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  42333924 ccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 42333825  T
Q  726 caaataggtctcggaattttatttagcacactattga 762  Q
    ||||||||||||||||||||||||||||||| |||||    
T  42333824 caaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 622 - 762
Target Start/End: Complemental strand, 43143736 - 43143596
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  43143736 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 43143637  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattga 762  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  43143636 cacgcaaataggtctcggaattttatttagcacacaattga 43143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 6690387 - 6690244
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  6690387 tcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaaactgaaaattctca 6690288  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  6690287 cacgcaaataggtctcgaaattttatttagcacactattgacgg 6690244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 30216894 - 30216751
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  30216894 tcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 30216795  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    || |||||||| ||||||||||||||||||||||||||||||||    
T  30216794 catgcaaatagatctcggaattttatttagcacactattgacgg 30216751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 624 - 765
Target Start/End: Original strand, 44156668 - 44156809
Alignment:
Q  624 gcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcaca 723  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||||||| ||    
T  44156668 gcccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctca 44156767  T
Q  724 cgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44156768 cgcaaataggtctcggaattttatttagcacactattgacgg 44156809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 626 - 765
Target Start/End: Original strand, 48989347 - 48989486
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    ||||| || ||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||    
T  48989347 ccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacg 48989446  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48989447 caaataggtctcggaattttatttagcacactattgacgg 48989486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 50205229 - 50205086
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||| |||| |||||||||||||||||    
T  50205229 tcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggacaatctgaaaattctca 50205130  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  50205129 cacgcaaataggtcttggaattttatttagcacactattgacgg 50205086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 622 - 756
Target Start/End: Complemental strand, 10353036 - 10352902
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||| | ||||||||||||||||||||||||||| |    
T  10353036 tcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggcaatctgaaaattctta 10352937  T
Q  722 cacgcaaataggtctcggaattttatttagcacac 756  Q
    |||||||||||||||||||||||||||||||||||    
T  10352936 cacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 25930723 - 25930866
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||| ||||||||||||||||| || ||||||||||| | ||| ||||| |||||| |||||||||||||||||| |||||||| |||    
T  25930723 tcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtca 25930822  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  25930823 cacgcaaataggtcttggaattttatttagcacactattgacgg 25930866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 20129325 - 20129466
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  20129325 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 20129424  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| ||||||||||  ||||||||||| |||||||||||||    
T  20129425 cacgtaaataggtcttagaattttatttggcacactattgac 20129466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 635 - 762
Target Start/End: Original strand, 35545981 - 35546108
Alignment:
Q  635 atcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggt 734  Q
    ||||| ||||||||| ||| |||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||    
T  35545981 atcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaatgggt 35546080  T
Q  735 ctcggaattttatttagcacactattga 762  Q
    ||| ||||||||||||||||||||||||    
T  35546081 ctctgaattttatttagcacactattga 35546108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 36382497 - 36382355
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||| ||||||||||||||||| || ||||| ||||||| ||| ||||| |||||| ||||||||||||| ||||||||||||| |||    
T  36382497 tcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-aagaaaaatttggacaatctgaaaattgtca 36382399  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  36382398 cacgcaaataggtcttggaattttatttagcacactattgacgg 36382355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 620 - 766
Target Start/End: Original strand, 26448066 - 26448211
Alignment:
Q  620 gatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattct 719  Q
    ||||| |||| ||| ||||||||||||||||||||| | | |||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||    
T  26448066 gatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaa-aaaaatttgggcaatctgaaaattct 26448164  T
Q  720 cacacgcaaataggtctcggaattttatttagcacactattgacgga 766  Q
    || || ||||||||| |||||||||||||||||||||||||| ||||    
T  26448165 catacacaaataggtttcggaattttatttagcacactattggcgga 26448211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 629 - 765
Target Start/End: Complemental strand, 29319850 - 29319714
Alignment:
Q  629 ggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaa 728  Q
    ||||| |||||||||||||||||||||||| ||||||||||  | ||| ||||| |||||| |||||||||||| |||||||||||||| |||||| |||    
T  29319850 ggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaatttgagcaatctgaaaattgtcacacacaa 29319751  T
Q  729 ataggtctcggaattttatttagcacactattgacgg 765  Q
    ||| |||| ||||||||||||||||||||||||||||    
T  29319750 ataagtcttggaattttatttagcacactattgacgg 29319714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 626 - 766
Target Start/End: Complemental strand, 29996131 - 29995991
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||| ||| |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| |||| | |||||||||||||||||||||||||||||  ||||    
T  29996131 ccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctgaaaattcttgcacg 29996032  T
Q  726 caaataggtctcggaattttatttagcacactattgacgga 766  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  29996031 caaatagttctcggaattttattaagcacactattgacgga 29995991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 635 - 762
Target Start/End: Complemental strand, 28877389 - 28877262
Alignment:
Q  635 atcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggt 734  Q
    |||||||||||||||||||||||  ||||| |||||  |||| |||| |||| || |||||||||||||| ||||| |||||||||||||||||||||||    
T  28877389 atcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatctaaaaattctcacacgcaaataggt 28877290  T
Q  735 ctcggaattttatttagcacactattga 762  Q
    ||||||||||||||||||||||||||||    
T  28877289 ctcggaattttatttagcacactattga 28877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 26439431 - 26439290
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| | ||| ||||| ||| || ||||||||||||||||||||||||||| |||    
T  26439431 tcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtca 26439332  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| | ||||||||||  ||||||||||||    
T  26439331 cacgtaaataggtcttgaaattttatttgacacactattgac 26439290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 34407436 - 34407295
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| | ||| ||||| ||| || ||||||||||||||||||||||||||| |||    
T  34407436 tcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtca 34407337  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| | ||||||||||  ||||||||||||    
T  34407336 cacgtaaataggtcttgaaattttatttgacacactattgac 34407295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 43355919 - 43356060
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| | ||| ||||| ||| || ||||||||||||||||||||||||||| |||    
T  43355919 tcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtca 43356018  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| | ||||||||||  ||||||||||||    
T  43356019 cacgtaaataggtcttgaaattttatttgacacactattgac 43356060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 622 - 758
Target Start/End: Complemental strand, 30077783 - 30077647
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||||  ||| ||||| |||||| ||||||||||||| ||||||||||||| | |    
T  30077783 tcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaatctgaaaattttta 30077684  T
Q  722 cacgcaaataggtctcggaattttatttagcacacta 758  Q
    ||| ||||||||||| | |||||||||||||||||||    
T  30077683 cacacaaataggtcttgaaattttatttagcacacta 30077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 13012203 - 13012344
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||   ||| ||||| ||| || |||||||||||||||||| |||||||| |||    
T  13012203 tcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtca 13012302  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  13012303 cacgtaaataggtcttggaattttatttggcacactattgac 13012344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 622 - 762
Target Start/End: Complemental strand, 17511386 - 17511245
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||| | ||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| |||||||||||||||||| |||||||| | |    
T  17511386 tcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtta 17511287  T
Q  722 cacgcaaataggtctcgg-aattttatttagcacactattga 762  Q
    ||||||||||||||| || |||||||||||||||| ||||||    
T  17511286 cacgcaaataggtcttggaaattttatttagcacattattga 17511245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 47500788 - 47500929
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||   ||| ||||| |||  | |||||||||||||||||| |||||||| |||    
T  47500788 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaatttgggcaatttgaaaattgtca 47500887  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  47500888 cacgtaaataggtcttggaattttatttggcacactattgac 47500929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 642 - 766
Target Start/End: Original strand, 1817752 - 1817876
Alignment:
Q  642 atttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaa 741  Q
    |||||||||||||||| |||| ||||||||| ||| | ||| ||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  742 ttttatttagcacactattgacgga 766  Q
    ||||||||| |||||||||| ||||    
T  1817852 ttttatttaacacactattgtcgga 1817876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 662 - 765
Target Start/End: Original strand, 6235575 - 6235678
Alignment:
Q  662 acccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattg 761  Q
    ||||||||||| ||| ||||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  6235575 acccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattg 6235674  T
Q  762 acgg 765  Q
    ||||    
T  6235675 acgg 6235678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 626 - 765
Target Start/End: Original strand, 40529034 - 40529173
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||| ||| ||||||||||||||||||||| || ||||| ||||    ||| ||||| |||||| ||||||||||||| |||| |||||||| ||||| |    
T  40529034 ccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaaaaagaaaaatttggacaatttgaaaattgtcacatg 40529133  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  40529134 caaataggtcttggaattttatttagcacactattgacgg 40529173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 685 - 762
Target Start/End: Complemental strand, 13392970 - 13392893
Alignment:
Q  685 tacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattga 762  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13392970 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 685 - 762
Target Start/End: Complemental strand, 13396109 - 13396032
Alignment:
Q  685 tacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattga 762  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13396109 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 622 - 733
Target Start/End: Original strand, 30109971 - 30110084
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggc--aatctgaaaattct 719  Q
    |||||||| ||| |||||||||||||||||||||||||||| || |||| | ||| |||||||||||| ||||||||||||| |  ||| |||||| |||    
T  30109971 tcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttggacaaaatatgaaaaatct 30110070  T
Q  720 cacacgcaaatagg 733  Q
    ||||||||||||||    
T  30110071 cacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 626 - 733
Target Start/End: Original strand, 48129985 - 48130087
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| |||||||||||||||| |||||||||||||||||||   ||| |||||||||||| ||||||||||||||     |||||| |||||||||    
T  48129985 ccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg-----tgaaaactctcacacg 48130079  T
Q  726 caaatagg 733  Q
    ||||||||    
T  48130080 caaatagg 48130087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 700
Target Start/End: Original strand, 6254572 - 6254637
Alignment:
Q  635 atcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatt 700  Q
    ||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||| || |||||||    
T  6254572 atcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 624 - 707
Target Start/End: Original strand, 45194193 - 45194276
Alignment:
Q  624 gcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaa 707  Q
    |||||| ||| ||| ||||||||||||||||| || ||||||||||||| ||| |||||||||||| || ||||  ||||||||    
T  45194193 gcccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaatattgggcaa 45194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 689
Target Start/End: Original strand, 27363376 - 27363443
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaa 689  Q
    |||||||||||| |||||   |||||||| ||||| ||||||||||||| | ||| ||||||||||||    
T  27363376 tcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacacttacaa 27363443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 622 - 766
Target Start/End: Original strand, 35090183 - 35090327
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  35090183 tcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaattctca 35090282  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgga 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35090283 cacgcaaataggtctcggaattttatttagcacactattgacgga 35090327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 34389208 - 34389065
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  34389208 tcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 34389109  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  34389108 cacgcaaataggtctcggaattttatttagcacattatcgacgg 34389065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 638 - 765
Target Start/End: Complemental strand, 38638372 - 38638245
Alignment:
Q  638 gataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctc 737  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38638372 gataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctc 38638273  T
Q  738 ggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||    
T  38638272 ggaattttatttagcacactattgacgg 38638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 635 - 765
Target Start/End: Complemental strand, 37002283 - 37002153
Alignment:
Q  635 atcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggt 734  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37002283 atcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggt 37002184  T
Q  735 ctcggaattttatttagcacactattgacgg 765  Q
    || ||||||||||||||||||||||||||||    
T  37002183 cttggaattttatttagcacactattgacgg 37002153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 636 - 765
Target Start/End: Original strand, 26624775 - 26624904
Alignment:
Q  636 tcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtc 735  Q
    ||||||||||||||| ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26624775 tcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtc 26624874  T
Q  736 tcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||    
T  26624875 tcggaattttatttagcacactattgacgg 26624904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 622 - 766
Target Start/End: Complemental strand, 8867883 - 8867739
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||| | ||| |||||| ||||||||||||||||||| ||||||| |||    
T  8867883 tcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggcaatcggaaaattttca 8867784  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgga 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8867783 cacgcaaataggtctcggaattttatttagcacactattgacgga 8867739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 3114248 - 3114105
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  3114248 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 3114149  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||    
T  3114148 cacacaaataggtcttggaattttatttagcacactattgacgg 3114105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 598 - 765
Target Start/End: Original strand, 36658173 - 36658339
Alignment:
Q  598 caggggcggtttcaccgcccgggatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaa 697  Q
    |||||||||||||||||||| |   | ||||| ||| |||||||||||||||||||| ||||||||| ||||| ||||| ||| ||| |||| || ||||    
T  36658173 caggggcggtttcaccgcccagcgac-cccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaa 36658271  T
Q  698 atttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36658272 atttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgg 36658339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 5555502 - 5555645
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| | ||| || || |||||| ||||||||||||||||||||||||||| |||    
T  5555502 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaatttgggcaatctgaaaattgtca 5555601  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||    
T  5555602 cacacaaataggtcttggaattttatttagcacactattgacgg 5555645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 33685579 - 33685722
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  33685579 tcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 33685678  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
     ||||||||| |||||  ||||||||||||||||||||||||||    
T  33685679 tacgcaaatatgtctcataattttatttagcacactattgacgg 33685722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 36630831 - 36630974
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||| || ||||| ||||||| ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  36630831 tcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 36630930  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||    
T  36630931 cacgcaaataggtcttggaattttagttagcacactattgacgg 36630974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 626 - 765
Target Start/End: Complemental strand, 40920151 - 40920012
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| |||||||||||||||||||||||   |||||||||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||| |    
T  40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 40920052  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40920051 caaataggtctcggaattttatttagcacactattgacgg 40920012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 14777259 - 14777118
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||   ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  14777259 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 14777160  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  14777159 cacgtaaataggtcttggaattttatttagcacactattgac 14777118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 8394140 - 8394283
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||| || ||||| ||||||| ||| ||||| |||||| | ||||||||||||||||||||||||| |||    
T  8394140 tcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggcaatctgaaaattgtca 8394239  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||| |||||||||| ||||||||||||||||||||||||||||    
T  8394240 cacgtaaataggtcttggaattttatttagcacactattgacgg 8394283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 43184620 - 43184477
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||| ||||||| ||||||||||||| | ||| ||||  |||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  43184620 tcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctgaaaattctca 43184521  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  43184520 cacgcaaataggtctctgaattttatttagcacactattgacgg 43184477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 7002740 - 7002883
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||  ||||||  |||||| |||||||||||||| ||||| |||||| ||||| || |||||||||| |||||| ||||||||||    
T  7002740 tcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggacaatctaaaaattctca 7002839  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  7002840 cacgcaaataggtcacggaattttatttagcacactattgacgg 7002883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 7048611 - 7048754
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||  ||||||  |||||| |||||||||||||| ||||| |||||| ||||| || |||||||||| |||||| ||||||||||    
T  7048611 tcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggacaatctaaaaattctca 7048710  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  7048711 cacgcaaataggtcacggaattttatttagcacactattgacgg 7048754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 678 - 733
Target Start/End: Complemental strand, 10868571 - 10868514
Alignment:
Q  678 acacacttacaagaagaaaaatttgggcaa--tctgaaaattctcacacgcaaatagg 733  Q
    ||||| |||||| |||||||||||||||||  ||||||||||||||| ||||||||||    
T  10868571 acacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 5e-61; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 28996745 - 28996888
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  28996745 tcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 28996844  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28996845 cacgcaaataggtctcggaattttatttagcacactattgacgg 28996888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 18339121 - 18339264
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||| |||||||||||||||||||||||| | ||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  18339121 tcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctca 18339220  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  18339221 catgcaaataggtctcggaattttatttagcacactattgacgg 18339264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 624 - 758
Target Start/End: Original strand, 29743300 - 29743434
Alignment:
Q  624 gcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcaca 723  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||  ||| ||||| |||||  ||||||||||||||||||||||||||||| |||    
T  29743300 gcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctgaaaattcttaca 29743399  T
Q  724 cgcaaataggtctcggaattttatttagcacacta 758  Q
    |||||||||||||||||||||||||||||||||||    
T  29743400 cgcaaataggtctcggaattttatttagcacacta 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 623 - 766
Target Start/End: Complemental strand, 33229487 - 33229344
Alignment:
Q  623 cgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcac 722  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||| || ||| ||||||||||||||||||||||||||||| ||    
T  33229487 cgcccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttac 33229388  T
Q  723 acgcaaataggtctcggaattttatttagcacactattgacgga 766  Q
    ||| ||||| ||||||| ||||||||||||||||||||| ||||    
T  33229387 acgtaaataagtctcgggattttatttagcacactattgccgga 33229344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 34948910 - 34948767
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||    
T  34948910 tcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtca 34948811  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||| ||||||| ||| | ||||||||||||||||||||||||||    
T  34948810 cacacaaatagatcttgaaattttatttagcacactattgacgg 34948767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 620 - 765
Target Start/End: Original strand, 13837834 - 13837979
Alignment:
Q  620 gatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattct 719  Q
    |||||| |||| || |||||||||||||| ||||||||| |||||||||||   ||  ||||| |||||| ||||||||||||||||||||||||||| |    
T  13837834 gatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt 13837933  T
Q  720 cacacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  13837934 cacacgcaaataggtcttggaattttatttagcacactattgacgg 13837979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 398632 - 398773
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||   ||| ||||| ||| || |||||||||||||||||| |||||||| |||    
T  398632 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtca 398731  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  398732 cacgtaaataggtcttggaattttatttggcacactattgac 398773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 622 - 689
Target Start/End: Complemental strand, 24697969 - 24697902
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaa 689  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| | ||| ||||||||||||    
T  24697969 tcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaa 24697902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 703
Target Start/End: Complemental strand, 31028514 - 31028435
Alignment:
Q  624 gcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgg 703  Q
    |||||| ||| ||||||||||||||||||||||| |||||| |||||   ||| ||||| |||||| ||| ||| |||||    
T  31028514 gcccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaaggaaattttgg 31028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 654
Target Start/End: Original strand, 3050093 - 3050126
Alignment:
Q  621 atcgcccgggctcaatcgataatttttgcacatt 654  Q
    ||||||||||||||||| ||||||||||||||||    
T  3050093 atcgcccgggctcaatcaataatttttgcacatt 3050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 45182996 - 45183139
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  45182996 tcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 45183095  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  45183096 cacacaaataggtctcggaattttatttagcacactattgacgg 45183139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 11018364 - 11018221
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  11018364 tcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 11018265  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  11018264 cacgcaaataggtctcagaattttatttagcacacaattgacgg 11018221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 622 - 764
Target Start/End: Complemental strand, 6931046 - 6930904
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||| |||||||||||||||||||    
T  6931046 tcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggcaatctgaaaattctca 6930947  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacg 764  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6930946 cacgcaaataggtctcggaattttatttagcacactattgacg 6930904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 27935193 - 27935336
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||   ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  27935193 tcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 27935292  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
     ||| ||||||||||||||||||||||||||| |||||||||||    
T  27935293 tacgaaaataggtctcggaattttatttagcatactattgacgg 27935336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 622 - 758
Target Start/End: Complemental strand, 19565653 - 19565517
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| || ||| ||||| |||||| ||||||||||||| ||||||||||||||| |    
T  19565653 tcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggacaatctgaaaattctta 19565554  T
Q  722 cacgcaaataggtctcggaattttatttagcacacta 758  Q
    |||||||||||||||||||||||||||||||||||||    
T  19565553 cacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 33040968 - 33041111
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||| ||||||| || ||||||||||||| |||||||||||||||||||  |||| |||||||||||| ||||||||||||  |||| |||||||| |||    
T  33040968 tcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaacaatttgaaaattttca 33041067  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33041068 cacgcaaataggtctcggaattttatttagcacactattgacgg 33041111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 626 - 763
Target Start/End: Complemental strand, 6269574 - 6269437
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  6269574 ccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 6269475  T
Q  726 caaataggtctcggaattttatttagcacactattgac 763  Q
     |||||||||| ||||||||||||||||||||||||||    
T  6269474 taaataggtcttggaattttatttagcacactattgac 6269437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 626 - 763
Target Start/End: Original strand, 19390165 - 19390302
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    ||||| || |||||||||||||||||||||||| ||||| ||||||| ||| ||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  19390165 ccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 19390264  T
Q  726 caaataggtctcggaattttatttagcacactattgac 763  Q
     |||||||||| ||||||||||||||||||||||||||    
T  19390265 taaataggtcttggaattttatttagcacactattgac 19390302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 622 - 758
Target Start/End: Original strand, 45335890 - 45336025
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||||||| || ||||| |||||| ||||||||| ||||||||||||||||||| |    
T  45335890 tcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtca-ttaacacatttacaaaaagaaaaatctgggcaatctgaaaattctta 45335988  T
Q  722 cacgcaaataggtctcggaattttatttagcacacta 758  Q
    ||||||||||||||| |||||||||||||||||||||    
T  45335989 cacgcaaataggtcttggaattttatttagcacacta 45336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 622 - 762
Target Start/End: Complemental strand, 6503721 - 6503581
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||| ||||||||| ||||||| ||||||||||| |||||  ||||||||||| |||||||||||  ||||||||||||||||||    
T  6503721 tcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaagaaaaatttaagcaatctgaaaattctca 6503622  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattga 762  Q
    || |||||||||||||||| ||||||||||||||| |||||    
T  6503621 caggcaaataggtctcggatttttatttagcacacaattga 6503581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 622 - 762
Target Start/End: Complemental strand, 34084274 - 34084134
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||| ||| ||||||||||||||||||||| |  ||||| ||||||| ||| ||||| |||||| |||||||||||||||||| |||||||| |||    
T  34084274 tcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaatatgaaaattatca 34084175  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattga 762  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  34084174 cacgcaaataggtcttggaattttatttagcacactattga 34084134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 626 - 763
Target Start/End: Complemental strand, 22968592 - 22968455
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| | ||| ||||| |||||| |||||||||||||||||||| |||||| |||||||    
T  22968592 ccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacg 22968493  T
Q  726 caaataggtctcggaattttatttagcacactattgac 763  Q
     |||||||||| | ||||||||||||||||||||||||    
T  22968492 taaataggtcttgaaattttatttagcacactattgac 22968455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 39771805 - 39771946
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| | ||| ||||| ||| || ||||||||||||||||||||||||||| |||    
T  39771805 tcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtca 39771904  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| | ||||||||||  ||||||||||||    
T  39771905 cacgtaaataggtcttgaaattttatttgacacactattgac 39771946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 40081891 - 40081750
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||| ||||||||| ||||| |||  ||| || ||||| |||||| |||||||||||||||||| |||||||| |||    
T  40081891 tcgcccgggctcgatcgataatttttgaacattagactcaaccaaaagctca-ttaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtca 40081793  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||| ||| || ||||| |||||||||||||||||||    
T  40081792 cacgcaaatagatcttgg-attttttttagcacactattgacgg 40081750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 626 - 765
Target Start/End: Original strand, 35514285 - 35514420
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| |||||||||||| ||| | |||| |||||||||||||| ||| ||||||    || ||||||||||||| |||| ||||||||||||| ||    
T  35514285 ccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacacac----aaaaagaaaaatttggacaatatgaaaattctcactcg 35514380  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  35514381 caaataggtctaggaattttattttgcacactattgacgg 35514420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 629 - 733
Target Start/End: Original strand, 5135291 - 5135397
Alignment:
Q  629 ggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggc--aatctgaaaattctcacacgc 726  Q
    ||||| |||||| ||||||| ||||||||||||||| |||||   ||| |||||||||||| ||||||||||||| |  |||| |||||||||||||| |    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttggacaaaatccgaaaattctcacacac 5135390  T
Q  727 aaatagg 733  Q
    |||||||    
T  5135391 aaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 622 - 762
Target Start/End: Complemental strand, 34136977 - 34136837
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  34136977 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 34136878  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattga 762  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  34136877 cacgcaaataggtctcgaaattttatttagcacacaattga 34136837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 16788177 - 16788034
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||| |||| |||||    
T  16788177 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatcttaaaactctca 16788078  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  16788077 cacgcaaataggtcttggaattttatttagcacactattgacgg 16788034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 23402123 - 23402264
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  23402123 tcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 23402222  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  23402223 cacgcaaataggtctcgaaattttatttaacacactattgac 23402264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 622 - 762
Target Start/End: Original strand, 4404023 - 4404163
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| |||||||||||||||||||| ||||||||||    
T  4404023 tcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctaaaaattctca 4404122  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattga 762  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  4404123 cacgcaaataggtctcggaattttatttagcacacaattga 4404163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 629 - 761
Target Start/End: Original strand, 9877242 - 9877374
Alignment:
Q  629 ggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaa 728  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaa 9877341  T
Q  729 ataggtctcggaattttatttagcacactattg 761  Q
    |||||||||| ||||||||||||||||||||||    
T  9877342 ataggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 625 - 765
Target Start/End: Original strand, 15838304 - 15838443
Alignment:
Q  625 cccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacac 724  Q
    ||||||||| || |||||||||||||||||| || ||||| ||||||| ||| ||||| |||||| ||||||||||||||||||||||||||| ||||||    
T  15838304 cccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaa-aagaaaaatttgggcaatctgaaaattttcacac 15838402  T
Q  725 gcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  15838403 gcaaataggtcttggaattttatttagcacactattgacgg 15838443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 3648946 - 3648803
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||||||| | ||| ||||| |||||| ||||||| ||||||||||||||||||| |||    
T  3648946 tcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctgaaaattgtca 3648847  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||    
T  3648846 cacgcaagtaggttttggaattttatttagcacactattgacgg 3648803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 622 - 766
Target Start/End: Original strand, 36408566 - 36408710
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||| ||||||| ||| |||||| |||||||||| |    
T  36408566 tcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggcaatttgaaaattctta 36408665  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgga 766  Q
    ||||| |||||||||| |||||||||||| |||||||||| ||||    
T  36408666 cacgctaataggtctcagaattttatttaacacactattgccgga 36408710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 622 - 765
Target Start/End: Complemental strand, 29728538 - 29728395
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||| |||| |||||||| ||||||||||||||| |||||||||||   ||| ||||| |||||| ||||||||||||||||||||||||||| | |    
T  29728538 tcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtga 29728439  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  29728438 cacgcaaataggtcttcgaattttatttagcacactattgacgg 29728395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 639 - 766
Target Start/End: Original strand, 42230971 - 42231096
Alignment:
Q  639 ataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcg 738  Q
    ||||||||||||||||| | ||||| |||||||| ||| ||||  |||||| |||||||||||||||||| |||||||||||| | |||||||||||||     
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctca 42231068  T
Q  739 gaattttatttagcacactattgacgga 766  Q
    ||||||||||||||||||||||||||||    
T  42231069 gaattttatttagcacactattgacgga 42231096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 623 - 733
Target Start/End: Original strand, 3435285 - 3435397
Alignment:
Q  623 cgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggc--aatctgaaaattctc 720  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||  | ||| |||||||||||| |||||||||||||||  |||||||||||||||    
T  3435285 cgcccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctc 3435384  T
Q  721 acacgcaaatagg 733  Q
    | |||||||||||    
T  3435385 aaacgcaaatagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 39914530 - 39914670
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||   ||| ||||| ||| || || ||||||||||||||| |||||||| |||    
T  39914530 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaa-aaaaatttgggcaatttgaaaattgtca 39914628  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    || | |||||||||| |||||||||||| |||||||||||||    
T  39914629 caagtaaataggtcttggaattttatttggcacactattgac 39914670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 623 - 762
Target Start/End: Complemental strand, 2729347 - 2729208
Alignment:
Q  623 cgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcac 722  Q
    ||||||||||| ||||||||||||| ||||||| | |||| ||||||| | ||| ||||||||| || ||||||  ||| |||||| |||||| |||||     
T  2729347 cgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttggcaatttgaaaactctcat 2729248  T
Q  723 acgcaaataggtctcggaattttatttagcacactattga 762  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  2729247 acgcaaataggtctcaaaattttatttagcacactattga 2729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 630 - 700
Target Start/End: Complemental strand, 40470637 - 40470567
Alignment:
Q  630 gctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatt 700  Q
    |||| ||||||||||||||||||||||||||||  |||||||| ||| ||||||||| || || |||||||    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaatt 40470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 17445328 - 17445471
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||  ||| |||||||||| |||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  17445328 tcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 17445427  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  17445428 cacgcaaataggtctcggaattttatttagcacattattgacgg 17445471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 622 - 764
Target Start/End: Original strand, 35907567 - 35907709
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| |||||   |||||||||| ||||||| |||||| ||||||||||||||||    
T  35907567 tcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaattttgggtaatctgaaaattctca 35907666  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacg 764  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  35907667 cacgcaaataggtctcggaattttatttagcacattattgacg 35907709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 3828999 - 3829141
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||| |||| || ||||||||||||||||||||| |||||||||||||||  ||| |||||||||||| ||||||||||||||||||||||||||| |||    
T  3828999 tcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattttca 3829098  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
     |||||||||||||| ||||||||||||||||||||||||||||    
T  3829099 tacgcaaataggtct-ggaattttatttagcacactattgacgg 3829141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 626 - 765
Target Start/End: Complemental strand, 321525 - 321386
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| ||||||||||||||  ||||||| |||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||| | |    
T  321525 ccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggcaatctgaaaattctcatatg 321426  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  321425 caaataggtctcggaattttatttaacacattattgacgg 321386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 620 - 765
Target Start/End: Complemental strand, 42311095 - 42310950
Alignment:
Q  620 gatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattct 719  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| |  || ||||| |||||| ||||||||||||||||||||||||||| |    
T  42311095 gatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt 42310996  T
Q  720 cacacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    |||||||||||| |||| | |||||||||||| || ||||||||||    
T  42310995 cacacgcaaataagtcttgaaattttatttagtacgctattgacgg 42310950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 7433460 - 7433603
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    ||||||| |||| ||| |||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||| |||||||||||| |||||| |||    
T  7433460 tcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctaaaaattgtca 7433559  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||| ||||||||||| | ||||||||||||||||||||||||||    
T  7433560 cacacaaataggtcttgaaattttatttagcacactattgacgg 7433603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 26144270 - 26144411
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||   ||| ||||| ||| || |||||||||||||||||| |||||||| |||    
T  26144270 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtca 26144369  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  26144370 cacgtaaataggtcttggaattttatttggcacactattgac 26144411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 32982208 - 32982067
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||| ||||| | |||||||||||||||||||||||||||||| ||||| | ||| ||| | |||||| ||||||||||||| ||||||||||||| |||    
T  32982208 tcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaatttggacaatctgaaaattgtca 32982109  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    ||| ||||||||||| ||||||||||||||||| ||||||||    
T  32982108 cacacaaataggtcttggaattttatttagcactctattgac 32982067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 629 - 733
Target Start/End: Complemental strand, 41972420 - 41972314
Alignment:
Q  629 ggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgg--gcaatctgaaaattctcacacgc 726  Q
    ||||| ||||||||||||||||||||||| |||||| ||||| | ||| |||||||||||| |||||||||||||    |||||||||||||||||||||    
T  41972420 ggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaaaaagaaaaatttggaaaaaatctgaaaattctcacacgc 41972321  T
Q  727 aaatagg 733  Q
    |||||||    
T  41972320 aaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 636 - 733
Target Start/End: Original strand, 33489716 - 33489815
Alignment:
Q  636 tcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggc--aatctgaaaattctcacacgcaaatagg 733  Q
    ||||||||||||| ||||||||| ||| | ||||| | ||| |||||||||| | |||||||||||| ||  ||||||||||||||||||||||||||||    
T  33489716 tcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagcaaaatctgaaaattctcacacgcaaatagg 33489815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 624 - 713
Target Start/End: Original strand, 23313255 - 23313345
Alignment:
Q  624 gcccgggctcaatcgataattt-ttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaa 713  Q
    |||||||||| || ||| |||| ||||||||||||| ||||  ||||||  ||| ||||| |||||| |||||||||||||||||||||||    
T  23313255 gcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaaaaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 108; Significance: 8e-54; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 622 - 765
Target Start/End: Original strand, 5245 - 5388
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| ||| |||||||||||||||||||||||| | ||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  5245 tcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctca 5344  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgacgg 765  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  5345 catgcaaataggtctcggaattttatttagcacactattgacgg 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 626 - 765
Target Start/End: Original strand, 52944 - 53083
Alignment:
Q  626 ccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctcacacg 725  Q
    |||||||| |||||||||||||||||||||||   |||||||||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||| |    
T  52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 53043  T
Q  726 caaataggtctcggaattttatttagcacactattgacgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53044 caaataggtctcggaattttatttagcacactattgacgg 53083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 31495 - 31636
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  31495 tcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggacaatctgaaaattctca 31594  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    | ||||||||||||| | |||||||||| |||||||||||||    
T  31595 ctcgcaaataggtctagtaattttattttgcacactattgac 31636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 620 - 763
Target Start/End: Original strand, 17855 - 17998
Alignment:
Q  620 gatcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattct 719  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |    
T  17855 gatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgt 17954  T
Q  720 cacacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| | |||||||||| | ||||||||||||||||||||||||    
T  17955 cacatgtaaataggtcttgaaattttatttagcacactattgac 17998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Original strand, 537 - 678
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||   ||| ||||| ||| || |||||||||||||||||| |||||||| |||    
T  537 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtca 636  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  637 cacgtaaataggtcttggaattttatttggcacactattgac 678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 622 - 763
Target Start/End: Complemental strand, 480609 - 480468
Alignment:
Q  622 tcgcccgggctcaatcgataatttttgcacattagacccaacccaaaagtcaatttacacacttacaagaagaaaaatttgggcaatctgaaaattctca 721  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||   ||| ||||| ||| || |||||||||||||||||| |||||||| |||    
T  480609 tcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtca 480510  T
Q  722 cacgcaaataggtctcggaattttatttagcacactattgac 763  Q
    |||| |||||||||| |||||||||||| |||||||||||||    
T  480509 cacgtaaataggtcttggaattttatttggcacactattgac 480468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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