View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704-Insertion-4 (Length: 679)

Name: NF4704-Insertion-4
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704-Insertion-4
NF4704-Insertion-4
[»] chr5 (1 HSPs)
chr5 (8-640)||(13217559-13218199)


Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 640
Target Start/End: Original strand, 13217559 - 13218199
Alignment:
Q  8 agtgccaaatccattcacagtcgagaggaactaccaaaggaccttcaaaaatacgagattctgaatgtttggcaagcaagggaagccaacaagcattgta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13217559 agtgccaaatccattcacagtcgagaggaactaccaaaggaccttcaaaaatacgagattctgaatgtttggcaagcaagggaagccaacaagcattgta 13217658  T
Q  108 cctaatcatacatatcaaaatcctccatccaatcatacctcaaggctaggctataccttccaaactatcattggatggtaatttaaaactgagatgatca 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13217659 cctaatcatacacatcaaaatcctccatccaatcatacctcaaggctaggctataccttccaaactatcattggatggtaatttaaaactgagatgatca 13217758  T
Q  208 taaagaaacatgactaaaacaaagtaacatagttcttgatctaataccaaaaatatatactatttgaaagaatattacctatagatagctctatcaagag 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13217759 taaagaaacatgactaaaacaaagtaacacagttcttgatctaataccaaaaatatatactatttgaaagaatattacctatagatagctctatcaagag 13217858  T
Q  308 caggaccatcataaagatgacgatttctatcaacagctgcaagaaactgaagctgttttttcgccacatcaacaaggtcaacgctcataccaatcttttg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13217859 caggaccatcataaagatgacgatttctatcaacagctgcaagaaactgaagctgttttttcgccacatcaacaaggtcaacgctcataccaatcttttg 13217958  T
Q  408 tgcttcattccatgcatgttcttgttctgcttccatcttcactcactttaacctgatcaattaacatcaatcttaacatattagtctcaattttataatc 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  13217959 tgcttcattccatgcatgttcttgttctgcttccatcttcactcactttaacctgatcaattaacatcaatcttcacatattagtctcaattatataatc 13218058  T
Q  508 aaaattcatcaattagt--------nnnnnnnnnntagtcaaatttagagaaaattgtacaagattagattagatgataatcaaaggttgatcaagcaga 599  Q
    |||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | |    
T  13218059 aaaattcatcaattagtaaaaaaaaaaaaaaaaaatagtcaaatttagagaaaattgtacaagattagattagatgataattaaaggttgatcaacgaca 13218158  T
Q  600 aaaatcaaagatcaattataattataagaagatgaagaatt 640  Q
    |||||||||||||| ||| ||||| ||||| ||||||||||    
T  13218159 aaaatcaaagatcagttagaattacaagaaaatgaagaatt 13218199  T

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