View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704-Insertion-5 (Length: 298)
Name: NF4704-Insertion-5
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 9605229 - 9604935
Alignment:
| Q |
8 |
tcatttatataggctatctttgagtcattatataccaaagttgattgtattgattgcatatgcctagcattatatagcccacgtactcaggttttttgga |
107 |
Q |
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| T |
9605229 |
tcatttatataggctatctttgagtcat-atataccaaagttgtttgtattgattgcatatgcctagcattatatagcccacgtactcaagttttttgga |
9605131 |
T |
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| Q |
108 |
cccatgatcgtgggacattt--tttatatatatgaattgagggtgctaacaaagtgttt-agtaaagcttatatatcatcttgcttttctgaccaagtta |
204 |
Q |
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|||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9605130 |
cccatgatcgtgtgacattttatatatatatatgaattgaaggtgctaacaaagtgtttgagtaaagcttatatatcatcttgcttttctgaccaagtta |
9605031 |
T |
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| Q |
205 |
ttaattcttacatgtacaagatcaacttatatttaagagatg-ccacgtgtatgtgaaaactt-gggtaggatctttaaagtgtttctaattagta |
298 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
9605030 |
ttaattcttacatgtacaaaatcaacttatatttgagagatgcccacgtgtatgtgaaaacttggggtaggatctttaaagtgtttctcattagta |
9604935 |
T |
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