View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704-Insertion-9 (Length: 665)
Name: NF4704-Insertion-9
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 12165636 - 12165328
Alignment:
| Q |
7 |
aattaattaatttatttgttgtattgaaggcactatacagcctgggattaaggaagttcttcttagcaggagttggaccacttggttgcattcctaatca |
106 |
Q |
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| T |
12165636 |
aattaattaatttatatgttgtattgaaggcactatacagcctgggattaaggaagttcttcttagcaggagttggaccacttggttgcattcctaatca |
12165537 |
T |
|
| Q |
107 |
aagagctaatggatttgccccaccaggaaggtgtgtggattcagtaaatcagatggttggaacttacaatggaggactcagatcaatggtggagcagttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12165536 |
aagagctaatggatttgccccaccaggaaggtgtgtggattcagtaaatcagatggttggaacttacaatggaggactcagatcaatggtggagcagttc |
12165437 |
T |
|
| Q |
207 |
aacagagaccattctgatgccaagtttgtatatggaaacacttatggtgtctttggtgatattcttaataaccctgctgcctatggtaagatataatact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12165436 |
aacagagaccattctgatgccaagtttgtatatggaaacacttatggtgtctttggtgatattcttaataaccctgctgcctatggtaagatttaatact |
12165337 |
T |
|
| Q |
307 |
actaataat |
315 |
Q |
| |
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||||||||| |
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| T |
12165336 |
actaataat |
12165328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 372 - 665
Target Start/End: Complemental strand, 12165235 - 12164942
Alignment:
| Q |
372 |
gtgtccgcatccgtgcttcatagtttacaaccaatataaacaatttgatttgattttatcttttactataagagcttaattaagttgtttattcaaccga |
471 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12165235 |
gtgtctgcatccgtgcttcatagtttacaaccaatataaacaattttattttattttatcttttgctataagagcttaattaagttgtttattcaaccga |
12165136 |
T |
|
| Q |
472 |
atacgatggatttgtgttcataatggtgattttttgttgtggttgcagcattcagtgttattgatagagcttgttgtggtcttggaaggaatagaggcca |
571 |
Q |
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| T |
12165135 |
agacgatggatttgtgttcataatggtgattttttgttgtggttgcagcattcagtgttattgatagagcttgttgtggtcttggaaggaatagaggcca |
12165036 |
T |
|
| Q |
572 |
aatatcatgtctcccaatgcaatttccatgtgcaaacagagcacaatatgtgttctgggatgctttccaccccacacagtctgcaacttatgta |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
12165035 |
aatatcatgtctcccaatgcaatttccatgtgcaaacagagcacaatatgtgttctgggatgcttttcacccaacgcagtctgcaacttatgta |
12164942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 14216885 - 14216843
Alignment:
| Q |
351 |
tcagtatccgtgtcagtgtctgtgtccgcatccgtgcttcatag |
394 |
Q |
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| T |
14216885 |
tcagtgtccgtgtc-gtgtctgtgtccgcatccgtgcttcatag |
14216843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 394
Target Start/End: Complemental strand, 14223014 - 14222972
Alignment:
| Q |
351 |
tcagtatccgtgtcagtgtctgtgtccgcatccgtgcttcatag |
394 |
Q |
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| T |
14223014 |
tcagtgtccgtgtc-gtgtctgtgtccgcatccgtgcttcatag |
14222972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 467
Target Start/End: Complemental strand, 48588592 - 48588564
Alignment:
| Q |
439 |
ataagagcttaattaagttgtttattcaa |
467 |
Q |
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| T |
48588592 |
ataagagcttaattaagttgtttattcaa |
48588564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 19213807 - 19213773
Alignment:
| Q |
360 |
gtgtcagtgtctgtgtccgcatccgtgcttcatag |
394 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
19213807 |
gtgtcagtgtccgtgtccgcatccgtgcttcatag |
19213773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 393
Target Start/End: Complemental strand, 25791650 - 25791616
Alignment:
| Q |
359 |
cgtgtcagtgtctgtgtccgcatccgtgcttcata |
393 |
Q |
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| T |
25791650 |
cgtgtcagtgtctgtgtccgtatccgtgcttcata |
25791616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 11560630 - 11560663
Alignment:
| Q |
409 |
aaacaatttgatttgattttatcttttactataa |
442 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
11560630 |
aaacaatttgatttgattttatcttttgctataa |
11560663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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