View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_14 (Length: 363)
Name: NF4704_high_14
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 47241805 - 47241477
Alignment:
| Q |
19 |
ataccaaattattactttgaagaagactgatgcagtgtgaataacttagtgaatgactgaatgtggttcatgactgacaaatatatttttggtggctatg |
118 |
Q |
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| T |
47241805 |
ataccaaattattactttgaagaagactgatgcagtgtgaataacttagtgaatgactgaatgtggttcatgactgacaaatatatttttggtggctatg |
47241706 |
T |
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| Q |
119 |
cggtttgacaatcaacttaattagctcaagcataattatatgatattccagtcactgcctgctaattttttatgataatcttaatgaccaagttcctttg |
218 |
Q |
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| T |
47241705 |
cggtttaacaatcaacttaattagctcaagcataattatatgatattccagtcactgcctgctaattttttatgataatcttaatgaccaagttcctttg |
47241606 |
T |
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| Q |
219 |
tgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgtctttgatagggtatactacattggttagtgaaacttaaagtgttgttttatt |
318 |
Q |
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| T |
47241605 |
tgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgtctttgatagggtatactacattggttagtgaaacttaaagtgttgttttatt |
47241506 |
T |
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| Q |
319 |
gtttatgatttgtatggttgaagtataat |
347 |
Q |
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| T |
47241505 |
gtttatgatttgtatggttgaagtataat |
47241477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 47246351 - 47246277
Alignment:
| Q |
200 |
taatgaccaagttcctttgtgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgtctttgata |
274 |
Q |
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| T |
47246351 |
taatgaccaagttcctttgtgcttaagttagcacttgttaatacaacctatgcttttggggtcttgtccttgata |
47246277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 47246246 - 47246169
Alignment:
| Q |
272 |
atagggtatactacattggttagtgaaacttaaagtgttgttttattgtttatgatttg--tatggttgaagtataat |
347 |
Q |
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||||||||||||||||||||||||| |||||| | |||||||| |||||||||||| || |||||| |||||||||| |
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| T |
47246246 |
atagggtatactacattggttagtggaacttataatgttgtttaattgtttatgatatgtatatggtcgaagtataat |
47246169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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