View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4704_high_16 (Length: 358)
Name: NF4704_high_16
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_16 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 24906997 - 24907345
Alignment:
| Q |
12 |
atgaaaatagaagtaagcatttggttgagagagaagctgtggattacatttctaataagaagaagaaaattatggacgaaagggcaaggttaaacgtccc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24906997 |
atgaaaatagaagtaagcatttggttgagagagaagctgtggattacatttctaataagaagaagaaaattatggacgaaagggcaaggttaaacgtccc |
24907096 |
T |
|
| Q |
112 |
atttataatctagagtcgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatggattttgtactggagggattgga |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907097 |
atttataatctagagttgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatggattttgtactggagggattgga |
24907196 |
T |
|
| Q |
212 |
tgattatggatttggtggatcacattgccacccttctgtaacgttactttcattttatacctcggttggttatttgaatttccacattttccttgagctc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907197 |
tgattatggatttggtggatcacattgccacccttatgtaacgttactttcattttatacctcggttggttatttgaatttccacattttccttgagctc |
24907296 |
T |
|
| Q |
312 |
attgttattacg--tatttgatatcttccttgataagtaataatttatt |
358 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
24907297 |
attgttattacgtctttttgatatcttccttgataagtaataatttatt |
24907345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 18264575 - 18264650
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgcca |
241 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| ||||||| |
|
|
| T |
18264575 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgcca |
18264650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 23869296 - 23869369
Alignment:
| Q |
161 |
aaaaattgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcac |
234 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||| |||| || ||||||| |||||||| ||||||||| |
|
|
| T |
23869296 |
aaaaattgtttggtggatggatctgatagattttgtagtggattaatcggatgataatggatttagtggatcac |
23869369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 24823039 - 24823107
Alignment:
| Q |
176 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
||||||||||||||||||| || | ||| ||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
24823039 |
gatggattagatggattttatagtagagagattggatggatatggatctcatggatcatattgccaccc |
24823107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 31302514 - 31302245
Alignment:
| Q |
16 |
aaatagaagtaagcatttggttgagagagaagctgtggattacatttctaataagaagaagaaaattatggacgaaagggcaaggttaaacgtcccattt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31302514 |
aaatagaagtaagcatttggctgagagagaggctgtggaatacgtttctaataagaagaagaaaattatggacgaaagggcaaggtgaaacgtcccattt |
31302415 |
T |
|
| Q |
116 |
ataatctagagtcgcatgtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatggattttgtactggagggattggatgat |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
31302414 |
ataatctagagtcgcatgtaacgacatttcta--ataagaag--gaaaaattgtttggtagatgaattagatggattttgtactcgagggattggatgga |
31302319 |
T |
|
| Q |
216 |
tatggatttggtggatcacattgccacccttctgtaacgttactttcattttatacctcggttggttatttgaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
31302318 |
tatggatttggtggatcacattgccacccttatgtaacgttactttaattttatacctcagttggttatttgaa |
31302245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 25245051 - 25244983
Alignment:
| Q |
176 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
25245051 |
gatggatttgatggattttgtagtggatggattggatggatatggatctcatggatcatattgccaccc |
25244983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 25275167 - 25275089
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| |||| || | ||||||| |||||||||| |
|
|
| T |
25275167 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatgaatctcatggatcatattgccaccc |
25275089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 46244306 - 46244374
Alignment:
| Q |
176 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||| ||||| ||||||||| |||||| |||||||||| |
|
|
| T |
46244306 |
gatggattggatggattttgtagtggatggatcggatggatatggatttcatggatctaattgccaccc |
46244374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 26858044 - 26857966
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||| ||||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
26858044 |
ttgtttgatagatggattggatggattttgtagtggatggattggatgaatatggatctcatggatcatattgccaccc |
26857966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 8933907 - 8933983
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccac |
242 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| ||||||||||| ||||||| | ||||||| |||||||| |
|
|
| T |
8933907 |
ttgtttgatggatggattggatggattttgtagtggatggattggatgaatatggatctcatggatcatattgccac |
8933983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 5708198 - 5708120
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| ||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
5708198 |
ttgtttgatggatggattggatggattttgtagtggatagattggatggatatggatctcatggatcatattgccaccc |
5708120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 9272896 - 9272953
Alignment:
| Q |
176 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatca |
233 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||| ||||||| || ||||||| |
|
|
| T |
9272896 |
gatggattggatggattttgtagtggatggattggatggatatggatctgatggatca |
9272953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 10369651 - 10369719
Alignment:
| Q |
176 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||| ||||| ||||||||| |||||| |||||||||| |
|
|
| T |
10369651 |
gatggattggatggattttgtagtggatggatcggatggatatggatttcatggatctaattgccaccc |
10369719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 14385 - 14463
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| |||||||||| |
|
|
| T |
14385 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgccaccc |
14463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 41189669 - 41189587
Alignment:
| Q |
161 |
aaaaattgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccacc |
243 |
Q |
| |
|
|||| ||||||| | |||||||| ||||||||||||| |||| |||||||||| ||||||| | ||||||| ||||||||| |
|
|
| T |
41189669 |
aaaatttgtttgatggatggattggatggattttgtagtggatggattggatggatatggatctcatggatcatattgccacc |
41189587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 9129510 - 9129568
Alignment:
| Q |
186 |
atggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9129510 |
atggattttgtagcggatggaatggatgaatatggatttggtggatcactttgccaccc |
9129568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 9137617 - 9137675
Alignment:
| Q |
186 |
atggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9137617 |
atggattttgtagcggatggaatggatgaatatggatttggtggatcactttgccaccc |
9137675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 34365493 - 34365439
Alignment:
| Q |
190 |
attttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||| || | |||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
34365493 |
attttgtagtgaatggattggatggttatagatttggtggatcaaattgccaccc |
34365439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 41397841 - 41397773
Alignment:
| Q |
176 |
gatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||| ||||| ||||||||| |||||| |||||||||| |
|
|
| T |
41397841 |
gatggattggatggattttgtagtggatggatcggatggatatggatttcatggatctaattgccaccc |
41397773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 17894031 - 17893953
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
|||||||||||||||||| ||||||| || | |||| |||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
17894031 |
ttgtttggtagatggattggatggatattatggtggatggattggatgtatatggatttgatggatcctattgccaccc |
17893953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 43323796 - 43323718
Alignment:
| Q |
166 |
ttgtttggtagatggattagatggattttgtactggagggattggatgattatggatttggtggatcacattgccaccc |
244 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||| |||||||||| ||| ||| | ||||||| |||||||||| |
|
|
| T |
43323796 |
ttgtttgatggatggattggatggattttgtagtggatggattggatggatatagatctcatggatcatattgccaccc |
43323718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University