View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_21 (Length: 322)
Name: NF4704_high_21
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 84 - 306
Target Start/End: Complemental strand, 27075135 - 27074913
Alignment:
| Q |
84 |
aaagaaatgataagaacaaatatactactataattattaccaagtcacaacaacttatgttactataatagatagtaaataatatagactttgattgtgc |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075135 |
aaagaaatgataagaacaaatatactactataattattaccaagtcacaacaacttatgttactataatagatagtaaataatatagactttgattgtgc |
27075036 |
T |
|
| Q |
184 |
ttttcttatttgtatatatccaatttgcactcttaaacaatcagttagtcaatttgatctctttctttgtaatcatcaaaacatgaatagtaagaattgt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075035 |
ttttcttatttgtatatatccaatttgcactcttaaacaatcagttagtcaatttgatctctttctttgtaatcatcaaaacatgaatagtaagaattgt |
27074936 |
T |
|
| Q |
284 |
atctcaatgaatatggttgttac |
306 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
27074935 |
atctcaatgaatatggttgttac |
27074913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 84 - 306
Target Start/End: Complemental strand, 27155229 - 27155006
Alignment:
| Q |
84 |
aaagaaatgataagaacaaatatactactataattattaccaagtcacaacaacttatgttactataatagatagtaaataatatagactttgattgtgc |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27155229 |
aaagaaatgataagaacaaatatactactataattattaccaagtcacaacaacttatgttactataatagatagtaaataatatagactttgattgtgc |
27155130 |
T |
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| Q |
184 |
tttt-cttatttgtatatatccaatttgcactcttaaacaatcagttagtcaatttgatctctttctttgtaatcatcaaaacatgaatagtaagaattg |
282 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27155129 |
tttttcttatttgtatatatccaatttgcactcttaaacaatcagttagtcaatttgatctctttctttgtaatcatcaaaacatgaatagtaagaattg |
27155030 |
T |
|
| Q |
283 |
tatctcaatgaatatggttgttac |
306 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
27155029 |
tatctcaatgaatatggttgttac |
27155006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 27075218 - 27075151
Alignment:
| Q |
32 |
tttcaattcatggaataattaaaaaatgatgtttattaagaagtcttaatgcaaagaaatgataagaa |
99 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27075218 |
tttcaattcatggaataattaaaaaatgatatttattaagaagtcttaatgcaaagaaatgataagaa |
27075151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 27155312 - 27155245
Alignment:
| Q |
32 |
tttcaattcatggaataattaaaaaatgatgtttattaagaagtcttaatgcaaagaaatgataagaa |
99 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27155312 |
tttcaattcatggaataattaaaaaatgatatttattaagaagtcttaatgcaaagaaatgataagaa |
27155245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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