View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_22 (Length: 319)
Name: NF4704_high_22
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 9336158 - 9336451
Alignment:
| Q |
7 |
tagattattctcaccccaataaatgaggcacaagactagtaggaaactgtctttctaaggggtcaaagtcattatagcattgacctggacttggaaattt |
106 |
Q |
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| T |
9336158 |
tagactattctcactccaataaatgaggcacaagactagtaggaaactgtctttctaaggg-tcaaagtcattatagcattgacctggacttggaaattt |
9336256 |
T |
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| Q |
107 |
tggttgtctagcactttgatttacccttggaggaatatgcaaattaaggatatatagctaagagaatcaagctcgacacaacctcagtcacacatagaaa |
206 |
Q |
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| T |
9336257 |
tggttgtctagcacttcgatttacccttggaggaatatgcaaattaatgatatatagctaagagaatcaagctcgacacaaccttagtcacacatagaaa |
9336356 |
T |
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| Q |
207 |
gatatgaaatgatttgcagtcacattactttttccttgatgatcatgataacaataacattagtgctaataccgctgcttgggaatgcccagaaa |
301 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9336357 |
gatacgaaatgatttgcagtcatattactttttccttgatgatcatgataacaataacattagtgctaataccgctgcttgggaatgcccagaaa |
9336451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 9363064 - 9363358
Alignment:
| Q |
7 |
tagattattctcaccccaataaatgaggcacaagactagtaggaaactgtctttctaaggggtcaaagtcattatagcattgacctggacttggaaattt |
106 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
9363064 |
tagactattctcaccccaataaatgaggcactagactagtaggaaactgtctttctaagga-tcaaagtcattatagcattgacctggccttggaaattt |
9363162 |
T |
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| Q |
107 |
tggttgtctagcactttgatttacccttggaggaatatgcaaattaaggatatatagctaagagaatcaagctcgacacaa-cctcagtcacacatagaa |
205 |
Q |
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| T |
9363163 |
tggttgtctagcacttcgatttacccttggaggaatatgcaaattaatgataaatagctaagaggatcaaacacgacacaaacctcagtcacacatagaa |
9363262 |
T |
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| Q |
206 |
agatatgaaatgatttgcagtcacattactttttccttgatgatcatgataacaataacattagtgctaataccgctgcttgggaatgcccagaaa |
301 |
Q |
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| T |
9363263 |
agatacaaaatgatttgcagtcacattactttttccttgatgatcatgataacaataacattagtgctaataccgcttcttgggaatgcccagaaa |
9363358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 132 - 301
Target Start/End: Complemental strand, 9243869 - 9243697
Alignment:
| Q |
132 |
cttggaggaatatgcaaattaaggatatatagctaagagaatcaagctcgacacaacctcagtcacacatagaaagatatgaaatgatttgcagtcacat |
231 |
Q |
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| T |
9243869 |
cttggaggaatatgcaaattaatgatatatagctaagagaatcaagctagatacaacctcactcacacatagaaagatatgaaatgatttgcagtcacaa |
9243770 |
T |
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| Q |
232 |
tactttttccttgatgatcatgataa---caataacattagtgctaataccgctgcttgggaatgcccagaaa |
301 |
Q |
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|||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9243769 |
tactttttccttcatgatcattataacagcaataacattagtgctaataccgctgcttgggaatgcccagaaa |
9243697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 9243964 - 9243896
Alignment:
| Q |
53 |
ctgtctttctaaggggtcaaagtcattatagcattgacctggacttggaaattttggttgtctagcactt |
122 |
Q |
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|||||||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9243964 |
ctgtctttctcaggg-tcaaactcatcatagcattgacctggacttggaaattttggttgtctagcactt |
9243896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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