View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4704_high_23 (Length: 299)
Name: NF4704_high_23
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 3554603 - 3554875
Alignment:
| Q |
16 |
tatgtttcatatgtaaggtctaccaaattttagatttcaataatatttcaataaaaatgtcatacctaaaagcttcttatgcataagttgaaacctttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3554603 |
tatgtttcatatgtaaggtctaccaaattttaaatttcaataatatttcaataaaaatctcatacctaaaagcttcttatgcataagttgaaacctttga |
3554702 |
T |
|
| Q |
116 |
ggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaagtctcactcacaataatttcattttttcttatatagtaagcaccttgtg |
215 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3554703 |
ggaaattcaatatatctaagtgtgcgaaaatcataactccatataccaaaagtctcactcacaataatttcattttttcttatatagtaagcaccttgtg |
3554802 |
T |
|
| Q |
216 |
cagcccacaatgcccaatccaaatccacacctagaagatatgccaacatacaagacaagaatttttcattcat |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3554803 |
cagcccacaatgcccaatccaaatccacacctacaagatatgccaacatacaagacaagaatttttcattcat |
3554875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 273
Target Start/End: Original strand, 3549063 - 3549269
Alignment:
| Q |
67 |
taaaaatgtcatacctaaaagcttcttatgcataagttgaaacctttgaggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaa |
166 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| |||||||||||||||||| |||||| |||||| ||||| | ||||||| |||||||| |||| || |
|
|
| T |
3549063 |
taaaaatgccatacctagaagcttcttctgcaaaagttgaaacctttgagggaattcttgatatcgaagtgaactaaaatcaatactccataaaccataa |
3549162 |
T |
|
| Q |
167 |
gtctcactcacaataatttcattttttcttatatagtaagcaccttgtgcagcccacaatgcccaatccaaatccacacctagaagatatgccaacatac |
266 |
Q |
| |
|
|| ||||||||| |||| |||| ||| |||||||||| |||||||||||||||||| |||||||| |||||||| || |||||| ||||| |||| |
|
|
| T |
3549163 |
tgttccctcacaatattttctttttctctaatatagtaagaaccttgtgcagcccacaaagcccaatctaaatccactccaccaagataagccaaaatac |
3549262 |
T |
|
| Q |
267 |
aagacaa |
273 |
Q |
| |
|
| ||||| |
|
|
| T |
3549263 |
atgacaa |
3549269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 286
Target Start/End: Original strand, 3531782 - 3532001
Alignment:
| Q |
67 |
taaaaatgtcatacctaaaagcttcttatgcataagttgaaacctttgaggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaa |
166 |
Q |
| |
|
|||||||| |||||||| ||||||||| || | ||||||||||||||||||||| ||| |||||| ||||| ||||||| | |||||| |||| || |
|
|
| T |
3531782 |
taaaaatgacatacctagaagcttcttttggacaagttgaaacctttgaggaaaatctggatatcgaagtgatttaaaatcaatattccatagaccataa |
3531881 |
T |
|
| Q |
167 |
gtctcactcacaataatttcattttttcttatatagtaagcaccttgtgcagcccacaatgcccaatccaaatccacacctagaagatatgccaacatac |
266 |
Q |
| |
|
|||||||||| || |||| |||| ||| |||||||||| ||||||||||| ||| || ||||||||||| ||||| || |||||| || ||||||| |
|
|
| T |
3531882 |
tgctcactcacattactttccttttctctaatatagtaagaaccttgtgcagtccataaagcccaatccaagtccaccccagcaagataagctaacatac |
3531981 |
T |
|
| Q |
267 |
aagacaagaatttttcattc |
286 |
Q |
| |
|
| ||||||||| ||| |||| |
|
|
| T |
3531982 |
atgacaagaatctttgattc |
3532001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 277
Target Start/End: Original strand, 3527345 - 3527553
Alignment:
| Q |
69 |
aaaatgtcatacctaaaagcttcttatgcataagttgaaacctttgaggaaattctagatatctaagtgtgcgaaaatcataactccatataccaaaagt |
168 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| ||||||||| ||||||| ||| ||| |||||| ||||| ||||||| | ||||||||||||||| |
|
|
| T |
3527345 |
aaaatgacatacctagaagcttcttttgcacaagttgaaatctttgagaaaaatctggatatcgaagtgatttaaaatcaatattccatataccaaaagg |
3527444 |
T |
|
| Q |
169 |
ctcactcacaataatttcattttttcttatatagtaagcaccttgtgcagcccacaatgcccaatccaaatccacacctagaagatatgccaacatacaa |
268 |
Q |
| |
|
||||||| || || |||| || | ||| |||||||||| ||||||||||| ||| || ||||||||||| || || || |||||| || |||||||| |
|
|
| T |
3527445 |
ctcactcgcattactttctttatctctaatatagtaagaaccttgtgcagtccataaagcccaatccaagtcaaccccagcaagataagctaacatacat |
3527544 |
T |
|
| Q |
269 |
gacaagaat |
277 |
Q |
| |
|
||||||||| |
|
|
| T |
3527545 |
gacaagaat |
3527553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University