View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_3 (Length: 550)
Name: NF4704_high_3
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 45589436 - 45588911
Alignment:
| Q |
19 |
aaattgcataccactgccactagtacttatttgataagaaggaaataaattaccatgatggcttccaaattgtgataaagatagagtacttgaaggatcc |
118 |
Q |
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| T |
45589436 |
aaattgcataccactgccactagtacttatttgataagaaggaaataaattaccatgatggcttccaaattgtgataaagatagagtgcttgaaggatcc |
45589337 |
T |
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| Q |
119 |
aagttatatggaaaaggaaaaccatttgatgaattattagtattataataattacccttttctgaactttcagcttctttacctttggtttgattcatac |
218 |
Q |
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| T |
45589336 |
aagttatatggaaaaggaaaaccatttgatgaattattagtattataataattacccttttctgaactttcagcttctttacctttggtttgattcatac |
45589237 |
T |
|
| Q |
219 |
cataaaaaccacctccaagagaaaaacaagtactacctgctggttgctgaaatagggtttgttgttgagtgaaactttgaggaatatcaagtggtggtaa |
318 |
Q |
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| T |
45589236 |
cataaaaaccacctccaagagaaaaacaagtactacctgctggttgctgaaatagggtttgttgttgagtgaaactttgaggaatatcaagtggtggtaa |
45589137 |
T |
|
| Q |
319 |
tttatcaatatcagattgagttgcttcaattaaccattcaacaactttactaggttgacttaaaccaagtctatcttgaagatcatatagctgaattgct |
418 |
Q |
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| T |
45589136 |
tttatcaatatcagattgagttgcttcaattaaccattcaacaactttactaggttgacttaaaccaagtctatcttgaagatcatatagctgaattgct |
45589037 |
T |
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| Q |
419 |
gttggtacagacaacctaatcctacggtctcttaatcctctaattgtgcaaactttgctgtgtctgtcttttcctcctaaagaacgtgacactctcacta |
518 |
Q |
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| T |
45589036 |
gttggtacagacaacctaatcctacggtctcttaatcctctaattgtgcaaactttgctgtgtctgtcttttcctcctaaagaacgtgacactctcacta |
45588937 |
T |
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| Q |
519 |
ttcttggatttcttgatgatgtccat |
544 |
Q |
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| T |
45588936 |
ttcttggatttcttaatgatgtccat |
45588911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 293 - 532
Target Start/End: Complemental strand, 7969404 - 7969165
Alignment:
| Q |
293 |
ctttgaggaatatcaagtggtggtaatttatcaatatcagattgagttgcttcaattaaccattcaacaactttactaggttgacttaaaccaagtctat |
392 |
Q |
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|||||||||| | |||||| || | ||||||||| || ||| |||||||||| |||||| |||| |||||||| ||||| | |||||||||| ||| |
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| T |
7969404 |
ctttgaggaaattgaagtggagggagtttatcaatgtctaattttgttgcttcaagtaaccaatcaattactttacttggttgtcctaaaccaagtttat |
7969305 |
T |
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| Q |
393 |
cttgaagatcatatagctgaattgctgttggtacagacaacctaatcctacggtctcttaatcctctaattgtgcaaactttgctgtgtctgtcttttcc |
492 |
Q |
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| T |
7969304 |
cttgaagatcatataattgaattgctgttggaactgaaagccttatccttctatctcttaaccctcttattgtacaaactttgctatgcctatctttgcc |
7969205 |
T |
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| Q |
493 |
tcctaaagaacgtgacactctcactattcttggatttctt |
532 |
Q |
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||| || | | ||| |||||||| ||||||||||||||| |
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| T |
7969204 |
tccaaatgttcttgatactctcacaattcttggatttctt |
7969165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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