View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4704_high_33 (Length: 255)
Name: NF4704_high_33
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 14340484 - 14340248
Alignment:
| Q |
3 |
acctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcat |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
14340484 |
acctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccatagctaatatcat |
14340385 |
T |
|
| Q |
103 |
tttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340384 |
tttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacata |
14340285 |
T |
|
| Q |
203 |
tataggttcagtttttcaccattcacttctttttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340284 |
tataggttcagtttttcaccattcacttctttttcat |
14340248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3601612 - 3601378
Alignment:
| Q |
1 |
ttacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3601612 |
ttacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttctaacttcttcctctgaagagttcggcttctgcagaccatagccaatatc |
3601513 |
T |
|
| Q |
101 |
attttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3601512 |
attttgtccaatatcaatggtgtaaatggcttttgagaaatcttcagtccttggaacgccacttctgagaggtggttctgtccctataaatgacatcac- |
3601414 |
T |
|
| Q |
201 |
tatataggttcagtttttcaccattcacttctttttcat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601413 |
---ataggttcagtttttcaccattcacttctttttcat |
3601378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 3568614 - 3568467
Alignment:
| Q |
1 |
ttacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||| | |||||||| |
|
|
| T |
3568614 |
ttacctgcactgcttgggagaattggctcaagatgtcaggaattgaccttctaacttgttcctctgaaga------cttctgcagaccaaagccaatatc |
3568521 |
T |
|
| Q |
101 |
attttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttgg |
154 |
Q |
| |
|
||||||| |||||||||| ||||||||||| || |||||||||| | ||||||| |
|
|
| T |
3568520 |
attttgtgcaatatcaattgtgtaaatggccttagagaaatctttagtccttgg |
3568467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3590707 - 3590634
Alignment:
| Q |
1 |
ttacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttc |
74 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||| ||||| |||| |
|
|
| T |
3590707 |
ttacctgcactgcttggaagaattggctcaagatatcaggaaatgaccttctaacttgttcctttgaagtgttc |
3590634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 1408874 - 1408690
Alignment:
| Q |
1 |
ttacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| | |||| ||| ||| |
|
|
| T |
1408874 |
ttacctgcactgcttgggagaattggctcaagatatcaggaattgaccttttaacttgttcctctgaagtg------ttctgtaaaccaatggcaagatc |
1408781 |
T |
|
| Q |
101 |
attttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaat |
191 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || ||||| || ||| |||||||||| |||||| ||| ||||| |||||||||||||||| |
|
|
| T |
1408780 |
attttgtccaatatcaattgtgtaaagggccttagagaattcctcattccttggaagaccacttttgaaaggtgattctgtccctataaat |
1408690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1416860 - 1416682
Alignment:
| Q |
1 |
ttacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatc |
100 |
Q |
| |
|
|||||| ||||| ||||| ||| | |||||| || |||||||||||||||| ||||| ||||||||||| || || | ||||| | ||| ||| |
|
|
| T |
1416860 |
ttaccttcactgattgggagaaattgctcaatatttcaggaattgacctttgaacttgttcctctgaagtgtat------tgaaaaccatgagcaagatc |
1416767 |
T |
|
| Q |
101 |
attttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
185 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || |||||||| ||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
1416766 |
attttgtccaatatcaattgtgtaaagggccttagagaaatcctcaggccttggaagaccacttttgagagatggttctgtccct |
1416682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1412010 - 1411832
Alignment:
| Q |
1 |
ttacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatc |
100 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || |||||||||||||||| ||||| ||| ||||||| || | | | | |||||| ||| ||| |
|
|
| T |
1412010 |
ttaccttcactgcttgggacaattggctcaatatttcaggaattgacctttgaacttgttcttctgaagtgt--gtc----gaaaaccataggcaagatc |
1411917 |
T |
|
| Q |
101 |
attttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
185 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || ||||| || ||| || |||||| |||||| ||||||| ||||| |||||| |
|
|
| T |
1411916 |
attttgtccaatatcaattgtgtaaagggccttagagaagtcctcaggccctggaagaccacttttgagaggcggttccgtccct |
1411832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 1421228 - 1421141
Alignment:
| Q |
98 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
185 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||| | |||| || ||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
1421228 |
atcatttagtccaatatcaattgtgtaaagggccgtacagaagtcctcaggccttggaagaccacttttgagagatggttctgtccct |
1421141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University