View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_34 (Length: 251)
Name: NF4704_high_34
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_34 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 1941075 - 1940835
Alignment:
| Q |
11 |
cagagagcgtaatagttatgatgatgtaaaaatcataatatattgtcatactctttgattaatggcggagatttgtttggcccaggagaggcagatgtgt |
110 |
Q |
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| T |
1941075 |
cagagggcgtaatagttatgatgatgtaaaaatcataatatattgtcatactctttgattaatggcggagatttgttaggcccaggagaggcagatgtgt |
1940976 |
T |
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| Q |
111 |
ctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacagtagcaaattcctcagttaaagagtatggaacaccatgattttctgctctctt |
210 |
Q |
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| T |
1940975 |
ctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacactagcaaattcctcagttaaagagtatggaacaccatgattttctgctctctt |
1940876 |
T |
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| Q |
211 |
catgcccacaaatccactcaatatggagtttccggaatgcc |
251 |
Q |
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| T |
1940875 |
catgcccacaaatccactcaatatggagtttccggaatgcc |
1940835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 1955771 - 1955591
Alignment:
| Q |
47 |
aatatattgtcatactctttgattaatggcggagatttgtttggcccaggagaggcagatgtgtctctcaagtgcaggaaatcaggcaggagtggatgca |
146 |
Q |
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| T |
1955771 |
aatattttggcatactctttgatcagtggtggagatttgttttgtcctggggtggcagatatgtctctcaaatgcaaagaatcaggtaggagtgcatgca |
1955672 |
T |
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| Q |
147 |
ttctatagacagtagcaaattcctcagttaaagagtatggaacaccatgattttctgctctcttcatgcccacaaatccac |
227 |
Q |
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| T |
1955671 |
tcctatagacagtcacaaattcttcagttagagagtatggaacaccatgattatctggttttttcatgcccaccaatccac |
1955591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 1926893 - 1926754
Alignment:
| Q |
97 |
agaggcagatgtgtctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacagtagcaaattcctcagttaaagagtatggaacaccatga |
196 |
Q |
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| T |
1926893 |
agagtcagatatgtccctcaaatgcagagaattgggtaggagttgatgcatcctatagacactcacaaattcctcagttaaagaatatggaacaccatga |
1926794 |
T |
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| Q |
197 |
ttttctgctctcttcatgcccacaaatccactcaatatgg |
236 |
Q |
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| T |
1926793 |
ttttttggtttcttcatacccacaaatccactcaagatgg |
1926754 |
T |
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