View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_37 (Length: 239)
Name: NF4704_high_37
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 5283660 - 5283793
Alignment:
| Q |
58 |
attgaagatataacttcccttataaggtagttaatcatattttgaccctacaaataaagatttgcttggattcatacaacagactatcagtgatggaaga |
157 |
Q |
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| T |
5283660 |
attgaagatataacttcccttataaggtagttaatcatattttgatgttacaaataaatatttgcttggattcataaaacagactatcagtgatggaaga |
5283759 |
T |
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| Q |
158 |
tactaatagtaacaatgactgataacaaaatttg |
191 |
Q |
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| T |
5283760 |
tactaataataacaatgactgataacaaaatttg |
5283793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 5256596 - 5256729
Alignment:
| Q |
58 |
attgaagatataacttcccttataaggtagttaatcatattttgaccctacaaataaagatttgcttggattcatacaacagactatcagtgatggaaga |
157 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
5256596 |
attgaatatataacttcccttataaggtagttaatcatattttggcgttacaaataaagattttcttggattcataaaacagactatcagtgatggaaga |
5256695 |
T |
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| Q |
158 |
tactaatagtaacaatgactgataacaaaatttg |
191 |
Q |
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| T |
5256696 |
tactaatagtaacaatggctgataacaaaatttg |
5256729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 5181244 - 5181311
Alignment:
| Q |
79 |
ataaggtagttaatcatattttgaccctacaaataaagatttgcttggattcatacaacagactatca |
146 |
Q |
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| T |
5181244 |
ataaggcaattaatcatattttgacgttacaaagaaatctttgcttggattcataaaacagactatca |
5181311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 5283573 - 5283612
Alignment:
| Q |
14 |
ctattgacatccatattctgcaaaagtaaggtatgctcaa |
53 |
Q |
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| T |
5283573 |
ctattgacatccatattctgtaaaagtaaggtatgctcaa |
5283612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 5101271 - 5101340
Alignment:
| Q |
79 |
ataaggtagttaatcatattttgaccctacaaataaagatttgcttggattcatacaacagactatcagt |
148 |
Q |
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| T |
5101271 |
ataaggtaattaatcatattttgacgttacagagaaatatttgcttggattcataaaaccaactatcagt |
5101340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 5136372 - 5136441
Alignment:
| Q |
79 |
ataaggtagttaatcatattttgaccctacaaataaagatttgcttggattcatacaacagactatcagt |
148 |
Q |
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|||||||| |||||||||||||||| |||| | ||| ||||||||||||||||| ||| ||||||||| |
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| T |
5136372 |
ataaggtaattaatcatattttgacgttacagagaaatatttgcttggattcataaaaccaactatcagt |
5136441 |
T |
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