View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704_high_40 (Length: 237)

Name: NF4704_high_40
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704_high_40
NF4704_high_40
[»] chr6 (1 HSPs)
chr6 (1-223)||(1940565-1940789)
[»] chr4 (2 HSPs)
chr4 (63-151)||(34671556-34671644)
chr4 (61-146)||(53376407-53376492)
[»] chr1 (4 HSPs)
chr1 (63-141)||(41676561-41676639)
chr1 (63-156)||(42456912-42457005)
chr1 (57-90)||(32801036-32801069)
chr1 (120-156)||(12947612-12947648)
[»] chr8 (3 HSPs)
chr8 (70-147)||(6659599-6659675)
chr8 (70-147)||(6740001-6740077)
chr8 (61-100)||(26834701-26834740)
[»] chr3 (1 HSPs)
chr3 (63-156)||(48517479-48517572)
[»] chr7 (1 HSPs)
chr7 (61-89)||(425571-425599)
[»] chr2 (1 HSPs)
chr2 (62-98)||(23932707-23932743)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1940789 - 1940565
Alignment:
Q  1 aattgaacttttagtatcatgacataaattaatgcaatcaacatnnnnnnnnnnn----ctataggtttttctatcatgtgcaaacttgcataaattaag 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||               ||| |||||||||||||||||||||||||||||||||||||    
T  1940789 aattgaacttttagtatcatgacataaattaatgcaatcaacataaaaaaaaaaaaaaactaaaggtttttctatcatgtgcaaacttgcataaattaag 1940690  T
Q  97 aaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaatacatagttttgcaatgacccgtaatgagacgtatatatgaagtaataacg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1940689 aaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaatacatagttttgcaatgacccgtaatgagacgt--atatgaagtaataacg 1940592  T
Q  197 acagtgaagatcaccgcatgtgttctt 223  Q
    |||||||| ||||| ||||||||||||    
T  1940591 acagtgaaaatcactgcatgtgttctt 1940565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 34671556 - 34671644
Alignment:
Q  63 tttttctatcatgtgcaaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaatacata 151  Q
    ||||||||||||||||||||||||||||| ||||||  ||||| | | ||||| || || |||||| | || |||||||||||||||||    
T  34671556 tttttctatcatgtgcaaacttgcataaaataagaaggcaaaagtgataagtttatgttgaaacttatacactttatattaaatacata 34671644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 53376407 - 53376492
Alignment:
Q  61 ggtttttctatcatgtgcaaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaat 146  Q
    ||||||| ||||||||| ||| ||||| |  ||||||| |  ||| ||| |||||  ||||||||| |||||||||||||||||||    
T  53376407 ggtttttttatcatgtgaaaatttgcacatgttaagaagtttaaaataagaagtttgtattaaaacctgtgcattttatattaaat 53376492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 41676561 - 41676639
Alignment:
Q  63 tttttctatcatgtgcaaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatat 141  Q
    ||||||||||||||||||| ||||| |  |||||||||  ||| ||| || ||  ||||||||||||||||||||||||    
T  41676561 tttttctatcatgtgcaaatttgcacatgttaagaaattcaaaataataattttgtattaaaacttgtgcattttatat 41676639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 42456912 - 42457005
Alignment:
Q  63 tttttctatcatgtgcaaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaatacatagtttt 156  Q
    ||||||||||||| |||||||| ||||   |||||| | |||| ||  ||||| |||||| || ||||||||||||||||||||| ||| ||||    
T  42456912 tttttctatcatgcgcaaacttacatagtataagaagttaaaaatagtaagtttatattagaatttgtgcattttatattaaataaataatttt 42457005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 32801036 - 32801069
Alignment:
Q  57 tataggtttttctatcatgtgcaaacttgcataa 90  Q
    ||||| ||||||||||||||||||||||||||||    
T  32801036 tatagatttttctatcatgtgcaaacttgcataa 32801069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 12947612 - 12947648
Alignment:
Q  120 ttaaaacttgtgcattttatattaaatacatagtttt 156  Q
    ||||||||||||||||||||||||||||  |||||||    
T  12947612 ttaaaacttgtgcattttatattaaataggtagtttt 12947648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 6659599 - 6659675
Alignment:
Q  70 atcatgtgcaaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaata 147  Q
    ||||||||||||||||||||   |||||| |||||| ||| || || || |||||||||||| |||||||||||||||    
T  6659599 atcatgtgcaaacttgcatattataagaagtcaaaa-taataaatttatcttaaaacttgtgtattttatattaaata 6659675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 6740001 - 6740077
Alignment:
Q  70 atcatgtgcaaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaata 147  Q
    ||||||||||||||||||||   |||||| |||||| ||| || || || |||||||||||| |||||||||||||||    
T  6740001 atcatgtgcaaacttgcatattataagaagtcaaaa-taataaatttatcttaaaacttgtgtattttatattaaata 6740077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 26834740 - 26834701
Alignment:
Q  61 ggtttttctatcatgtgcaaacttgcataaattaagaaat 100  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  26834740 ggtttttctatcatgtgcaaatttgcatatattaagaaat 26834701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 48517479 - 48517572
Alignment:
Q  63 tttttctatcatgtgcaaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaatacatagtttt 156  Q
    ||||| ||||||||||||||||| ||||||||| || | |||| ||  || || || || |||||| | |||||||||||||||| ||| ||||    
T  48517479 tttttgtatcatgtgcaaacttgaataaattaaaaagttaaaagtagtaaatttatcttcaaacttatacattttatattaaatatataatttt 48517572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 425599 - 425571
Alignment:
Q  61 ggtttttctatcatgtgcaaacttgcata 89  Q
    |||||||||||||||||||||||||||||    
T  425599 ggtttttctatcatgtgcaaacttgcata 425571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 23932743 - 23932707
Alignment:
Q  62 gtttttctatcatgtgcaaacttgcataaattaagaa 98  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  23932743 gtttttctatcatgtgcaaatttgcatatattaagaa 23932707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University