View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_41 (Length: 236)
Name: NF4704_high_41
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47533436 - 47533655
Alignment:
| Q |
1 |
aactgtttcaccaaaaaactatgtagcaactttttctctttgagcatgcaccttgtaatgtccatgataatttttatcctcctatcagctagaccatgag |
100 |
Q |
| |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47533436 |
aactttttcacccaaaaactatgtagcaactttttctctttgagcatgcaccttgtaatgtccatgataatttttatcctcatatcagctagaccatgag |
47533535 |
T |
|
| Q |
101 |
gtttatatggttctatgacttactttccatctctgtacagaaagactcaaactcatttgatgtgcactcaccacctccatcacttcctagcactttcatt |
200 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47533536 |
gtttatatggttctatgacttacttcccatctctgtacagaaagactcaaactcatttgatgtgcactcaccacctccatcacttcctagcactttcatt |
47533635 |
T |
|
| Q |
201 |
tgtctttttgctcgcttttc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
47533636 |
tgtctttttgctcgcttttc |
47533655 |
T |
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