View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_5 (Length: 521)
Name: NF4704_high_5
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 42394148 - 42393656
Alignment:
| Q |
13 |
catagggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgat |
112 |
Q |
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| T |
42394148 |
catagggaagccgaacttgtcagatttttttcctgcgctggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgat |
42394049 |
T |
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| Q |
113 |
ggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaagg |
212 |
Q |
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| T |
42394048 |
ggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaagg |
42393949 |
T |
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| Q |
213 |
aggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcac- |
311 |
Q |
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| T |
42393948 |
aggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcact |
42393849 |
T |
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| Q |
312 |
nnnnnnngcggcatatggtttatttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcacgtgttgaagaacttaatacc |
411 |
Q |
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| T |
42393848 |
tttttttgcggtatatggtttgtttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaatacc |
42393749 |
T |
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| Q |
412 |
attgagtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaacc |
504 |
Q |
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| T |
42393748 |
attgagtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgaatttgcaatggcagaaatgatgaacaaacc |
42393656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 42378229 - 42377959
Alignment:
| Q |
17 |
gggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaa |
116 |
Q |
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| T |
42378229 |
gggaagccgaatttgtcggatttttttcctgggttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatggga |
42378130 |
T |
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| Q |
117 |
tatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggag---agtgaaagtaaggattttttgcagtttttgttgaatttgaagga |
213 |
Q |
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| T |
42378129 |
tatttgagaagatgattggtgaacgattgaagaaggaagaggatgggaaggagaataatgggagtagggactttctgcagtttttgttgaatttgaagga |
42378030 |
T |
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| Q |
214 |
ggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgtt |
284 |
Q |
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| T |
42378029 |
ggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttgtt |
42377959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 426 - 504
Target Start/End: Complemental strand, 42377182 - 42377104
Alignment:
| Q |
426 |
aacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaacc |
504 |
Q |
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| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaacc |
42377104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 42387539 - 42387455
Alignment:
| Q |
417 |
gtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaa |
501 |
Q |
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| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa |
42387455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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