View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_6 (Length: 520)
Name: NF4704_high_6
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Original strand, 41636728 - 41637220
Alignment:
| Q |
16 |
atcataaataaattcaagcaatcttcaaaatccaccctttgaaattttaccaaaattccaatctcttaataacatgattacaaatagaaagtaacaaaat |
115 |
Q |
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| T |
41636728 |
atcataaataaattcaagcaatcttcaatatccaccctttgaaattttaccaaaatttcaatctcttaataacatgattacaaatagaaagtaacaaaat |
41636827 |
T |
|
| Q |
116 |
acaatgtcattattaaacaaactttcttacacgtgctcccttcaaacttcaaatagagagtaatgccgctaaaattctttcaaatagcctcttcaaatac |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41636828 |
acaatgccattattaaacaaactttcttacacgtgctcccttcaaacttcaaatagagagtaatgccgctaaaattctttcaaatagcctcttcaaatac |
41636927 |
T |
|
| Q |
216 |
cctttcatccaaatatattgaacatcatttacctaattcaaactgtctttcaaaattcaaaagttcacttccaaaactaactcatcttacaacactttct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41636928 |
cctttcatccaaatatattgaacatcatttacctaattcaaactgtctttcaaaattcaaaagttcacttccaaaactaactcatcttacaacactttct |
41637027 |
T |
|
| Q |
316 |
tcaacaacaagcaattccacactctctttcactcttcaacatcaactttccattccttctcttttccacttctaaccgttcacttgttccttcctttctc |
415 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41637028 |
tcaacaacaagcaattccaca--ctctttcactcttcaacatcaactctccattccttctcttttccacttctaaccgttcacttgttccttcctttctc |
41637125 |
T |
|
| Q |
416 |
tttaaccaaatatctcttaatattgacgcaaaaccaaataacctttcnnnnnnntcgaataagttcaaacggaaaccaacaatttctttcctatg |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||||| ||||||||||||| |
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| T |
41637126 |
tttaaccaaatatctcttaatattgacgcaaaaccaaataacctttcaaaaaaatcaaacaagttcatacggaaaccaacactttctttcctatg |
41637220 |
T |
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