View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_high_9 (Length: 421)
Name: NF4704_high_9
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 25955717 - 25956122
Alignment:
| Q |
1 |
agcagagaaaacacatttcttcatattgggatatattttcctttttcattcaattaggagaccaaaaagcatttgannnnnnn-atcttatcatttgctc |
99 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
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| T |
25955717 |
agcaaagaaaacacatttcttcatattgggatatattttcctttttcattca-ttaggagaccaaaaagcatttgattttttttattttatcatttgctc |
25955815 |
T |
|
| Q |
100 |
ttcccaaacactggtacaacataaccaaccaactccactgatcagtagtatggtacattttgttgtttttcattttccaagttttgacatcttcatcatc |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25955816 |
ttcccaa-cactggtacaacataaccaaccaactccactgatcagtagtagggtacattttgttgtttttcattttccaagttttgacatcttcctcatc |
25955914 |
T |
|
| Q |
200 |
taacaaaggttttaacctagtttttgagtataaatatccacaaaagagggagggatagttcatagttgtgaacaatgtcaaattagaaaaggggagtaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25955915 |
taacaaaggttttaacctagtttttgagtataaatatccacaaaagagggagggatagttcatagttgtgaacaatgtcaaattagaaaaggggagtaac |
25956014 |
T |
|
| Q |
300 |
aaaacacataccaccttcattttttcttattagttcatacatattgaatacaagagttagtagccactaatctataactcctacaccccattactatacc |
399 |
Q |
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|||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25956015 |
aaaacacataccaccttcatttttacttttaagttcatacatatttaatacaagagttagtagccactaatctataactcctacaccccattactatacc |
25956114 |
T |
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| Q |
400 |
tcactttt |
407 |
Q |
| |
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|||||||| |
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| T |
25956115 |
tcactttt |
25956122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 39776723 - 39776677
Alignment:
| Q |
189 |
tcttcatcatctaacaaaggttttaacctagtttttgagtataaata |
235 |
Q |
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|||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
39776723 |
tcttcatcattcaacaaggattttaacctagtttttgagtataaata |
39776677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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