View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704_low_1 (Length: 799)

Name: NF4704_low_1
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704_low_1
NF4704_low_1
[»] chr4 (29 HSPs)
chr4 (26-169)||(19109562-19109703)
chr4 (526-597)||(19908692-19908763)
chr4 (531-575)||(36479013-36479057)
chr4 (526-592)||(37930837-37930903)
chr4 (542-600)||(39842018-39842076)
chr4 (526-600)||(42344608-42344682)
chr4 (725-778)||(1866346-1866399)
chr4 (537-602)||(6459925-6459990)
chr4 (560-600)||(13276126-13276166)
chr4 (535-591)||(41536928-41536984)
chr4 (532-600)||(51436602-51436670)
chr4 (560-600)||(56309324-56309364)
chr4 (540-603)||(874453-874516)
chr4 (529-600)||(14202472-14202543)
chr4 (560-603)||(17134119-17134162)
chr4 (526-597)||(30135140-30135211)
chr4 (526-573)||(34960147-34960194)
chr4 (529-600)||(35021460-35021531)
chr4 (525-600)||(43034331-43034406)
chr4 (526-600)||(24664981-24665055)
chr4 (560-598)||(29910460-29910498)
chr4 (526-592)||(48171886-48171952)
chr4 (542-592)||(56096209-56096259)
chr4 (526-599)||(35823374-35823446)
chr4 (527-592)||(41520959-41521024)
chr4 (526-587)||(46434750-46434811)
chr4 (554-599)||(49952587-49952632)
chr4 (526-603)||(54500563-54500640)
chr4 (526-583)||(54677239-54677296)
[»] chr5 (29 HSPs)
chr5 (26-169)||(36185671-36185814)
chr5 (525-600)||(29695012-29695087)
chr5 (247-336)||(36185910-36185999)
chr5 (538-608)||(23118053-23118123)
chr5 (526-603)||(8544979-8545056)
chr5 (527-600)||(11637563-11637636)
chr5 (530-591)||(37073762-37073823)
chr5 (527-598)||(39914900-39914970)
chr5 (526-600)||(40715939-40716013)
chr5 (527-600)||(5107236-5107309)
chr5 (534-591)||(41630110-41630167)
chr5 (527-598)||(26409252-26409323)
chr5 (741-779)||(1554078-1554116)
chr5 (720-782)||(4084877-4084939)
chr5 (525-603)||(17672289-17672367)
chr5 (720-770)||(18617437-18617487)
chr5 (526-592)||(20125032-20125096)
chr5 (741-775)||(22799759-22799793)
chr5 (525-575)||(26655486-26655536)
chr5 (525-575)||(26927071-26927121)
chr5 (554-599)||(8682412-8682457)
chr5 (719-776)||(17071220-17071277)
chr5 (719-776)||(19128766-19128823)
chr5 (719-776)||(19360474-19360531)
chr5 (527-600)||(32200438-32200511)
chr5 (526-587)||(37054259-37054320)
chr5 (550-603)||(39610355-39610408)
chr5 (526-603)||(40027754-40027831)
chr5 (526-587)||(41266396-41266457)
[»] chr6 (21 HSPs)
chr6 (46-339)||(21377354-21377666)
chr6 (526-599)||(8629686-8629759)
chr6 (526-587)||(24623307-24623368)
chr6 (525-600)||(5632131-5632206)
chr6 (527-602)||(32524411-32524486)
chr6 (526-599)||(4826288-4826361)
chr6 (525-602)||(10278448-10278525)
chr6 (526-587)||(12232172-12232233)
chr6 (535-599)||(404161-404225)
chr6 (551-603)||(28758815-28758867)
chr6 (560-599)||(2426719-2426758)
chr6 (525-592)||(2445304-2445371)
chr6 (560-603)||(4553730-4553773)
chr6 (526-573)||(15169955-15170002)
chr6 (526-573)||(15178727-15178774)
chr6 (537-600)||(19277571-19277634)
chr6 (526-600)||(788863-788937)
chr6 (529-599)||(29069481-29069551)
chr6 (526-591)||(8569715-8569780)
chr6 (527-600)||(16390426-16390499)
chr6 (551-592)||(24212554-24212595)
[»] chr7 (26 HSPs)
chr7 (525-600)||(35142138-35142213)
chr7 (526-600)||(7388029-7388103)
chr7 (526-597)||(21105603-21105674)
chr7 (720-778)||(25343236-25343294)
chr7 (525-575)||(42227794-42227844)
chr7 (554-602)||(21580811-21580859)
chr7 (525-597)||(23221392-23221464)
chr7 (719-770)||(15305245-15305296)
chr7 (554-597)||(26713112-26713154)
chr7 (525-592)||(40187625-40187692)
chr7 (741-779)||(1417626-1417664)
chr7 (525-603)||(7994873-7994951)
chr7 (525-575)||(27833390-27833440)
chr7 (741-779)||(38225971-38226009)
chr7 (537-599)||(39926539-39926601)
chr7 (525-591)||(45425459-45425525)
chr7 (526-592)||(48837872-48837938)
chr7 (526-603)||(429168-429245)
chr7 (721-782)||(7668480-7668541)
chr7 (530-575)||(7908615-7908660)
chr7 (551-592)||(8903657-8903698)
chr7 (526-603)||(24099226-24099302)
chr7 (526-599)||(28200375-28200448)
chr7 (526-575)||(30397091-30397140)
chr7 (526-603)||(32315217-32315294)
chr7 (720-781)||(40273557-40273618)
[»] chr3 (18 HSPs)
chr3 (526-600)||(7464481-7464555)
chr3 (525-598)||(7651185-7651258)
chr3 (526-603)||(47039421-47039498)
chr3 (526-582)||(48657807-48657863)
chr3 (550-598)||(22462311-22462359)
chr3 (720-779)||(46150725-46150784)
chr3 (526-600)||(7827505-7827579)
chr3 (526-600)||(7829893-7829967)
chr3 (549-591)||(25485481-25485523)
chr3 (525-587)||(48209200-48209262)
chr3 (525-579)||(52453246-52453300)
chr3 (719-780)||(13477054-13477115)
chr3 (719-776)||(27082773-27082830)
chr3 (527-600)||(34899094-34899167)
chr3 (535-600)||(46226077-46226141)
chr3 (719-776)||(48648200-48648257)
chr3 (719-776)||(48764474-48764531)
chr3 (527-592)||(52119381-52119446)
[»] chr2 (37 HSPs)
chr2 (526-602)||(31815877-31815953)
chr2 (560-603)||(1238156-1238199)
chr2 (525-597)||(31397778-31397850)
chr2 (525-592)||(5168568-5168635)
chr2 (525-592)||(9547398-9547465)
chr2 (526-575)||(4238781-4238830)
chr2 (542-603)||(9519720-9519781)
chr2 (530-599)||(40967365-40967434)
chr2 (719-779)||(9540328-9540388)
chr2 (526-602)||(20565065-20565141)
chr2 (525-597)||(29544627-29544699)
chr2 (719-778)||(9276326-9276385)
chr2 (526-573)||(24581007-24581054)
chr2 (525-592)||(25395431-25395498)
chr2 (535-598)||(28202296-28202359)
chr2 (526-597)||(36264469-36264540)
chr2 (719-778)||(38361064-38361123)
chr2 (720-778)||(1296377-1296435)
chr2 (526-600)||(2256968-2257042)
chr2 (526-600)||(14735883-14735957)
chr2 (560-598)||(20239342-20239380)
chr2 (526-600)||(20455888-20455962)
chr2 (741-779)||(22301865-22301903)
chr2 (526-600)||(27412826-27412900)
chr2 (526-600)||(29798507-29798581)
chr2 (526-592)||(29809331-29809397)
chr2 (526-600)||(31837926-31838000)
chr2 (560-602)||(34242817-34242859)
chr2 (534-600)||(40295456-40295522)
chr2 (542-600)||(44026605-44026663)
chr2 (719-776)||(18174668-18174725)
chr2 (526-591)||(27935062-27935127)
chr2 (526-603)||(30045447-30045524)
chr2 (526-603)||(30050610-30050687)
chr2 (526-603)||(30141654-30141731)
chr2 (537-598)||(37320518-37320579)
chr2 (526-591)||(39555426-39555490)
[»] chr1 (24 HSPs)
chr1 (526-597)||(33153870-33153941)
chr1 (529-600)||(37705122-37705193)
chr1 (526-598)||(10292935-10293007)
chr1 (529-600)||(2613719-2613790)
chr1 (525-600)||(27533240-27533315)
chr1 (525-603)||(3777712-3777790)
chr1 (528-582)||(13401612-13401666)
chr1 (526-603)||(14768800-14768878)
chr1 (526-592)||(41973260-41973326)
chr1 (527-600)||(3431327-3431400)
chr1 (526-591)||(22388165-22388230)
chr1 (560-600)||(2884472-2884512)
chr1 (532-592)||(18056712-18056772)
chr1 (528-599)||(12212293-12212364)
chr1 (525-600)||(17139506-17139581)
chr1 (549-600)||(30678826-30678877)
chr1 (720-775)||(50271783-50271838)
chr1 (525-603)||(21041338-21041416)
chr1 (561-591)||(28341187-28341217)
chr1 (526-592)||(29042542-29042608)
chr1 (526-603)||(15382809-15382886)
chr1 (526-599)||(16967184-16967257)
chr1 (526-587)||(17917128-17917189)
chr1 (563-600)||(18091200-18091237)
[»] chr8 (19 HSPs)
chr8 (527-600)||(21557430-21557503)
chr8 (527-597)||(23159441-23159511)
chr8 (527-600)||(11708983-11709056)
chr8 (525-605)||(6471503-6471583)
chr8 (526-602)||(12938917-12938993)
chr8 (551-599)||(13272537-13272585)
chr8 (536-592)||(18959154-18959210)
chr8 (526-598)||(34420852-34420924)
chr8 (548-599)||(3456833-3456884)
chr8 (525-600)||(13357430-13357505)
chr8 (526-600)||(9241012-9241086)
chr8 (536-598)||(16843523-16843585)
chr8 (718-776)||(26654376-26654434)
chr8 (525-599)||(30071505-30071579)
chr8 (526-599)||(3650518-3650591)
chr8 (535-600)||(10732774-10732839)
chr8 (526-603)||(12133527-12133604)
chr8 (526-603)||(18422443-18422520)
chr8 (527-592)||(26799189-26799254)
[»] scaffold0204 (1 HSPs)
scaffold0204 (539-597)||(16151-16209)
[»] scaffold0021 (1 HSPs)
scaffold0021 (525-597)||(161141-161213)
[»] scaffold0008 (1 HSPs)
scaffold0008 (527-600)||(119566-119639)
[»] scaffold1160 (1 HSPs)
scaffold1160 (526-591)||(1702-1767)
[»] scaffold0017 (1 HSPs)
scaffold0017 (554-603)||(35946-35995)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 19109562 - 19109703
Alignment:
Q  26 cattaagaagattgatgcaaacaagagaactagaataataagctagctctgtataacccaaatccttagccaataccagaccatgatatatgacagaaag 125  Q
    ||||||||||||||||||||| ||||||| | |||||| ||| ||||||| |||||||||||||||||||||  ||||  |||||  | |||||||||||    
T  19109562 cattaagaagattgatgcaaataagagaattcgaataacaagttagctctatataacccaaatccttagccatgaccaacccatg--aaatgacagaaag 19109659  T
Q  126 tttagctaggataatatcatttgagtttggaagaaaaccagaaa 169  Q
    || |||||| ||||||||||| ||||||||||||||| ||||||    
T  19109660 ttcagctagcataatatcattggagtttggaagaaaatcagaaa 19109703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 526 - 597
Target Start/End: Complemental strand, 19908763 - 19908692
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    |||||||||||||||||||||||| || || || |||||||||||||||| || ||| ||||||||| ||||    
T  19908763 gtggtggtcggggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctcac 19908692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 575
Target Start/End: Complemental strand, 36479057 - 36479013
Alignment:
Q  531 ggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  36479057 ggtcggggttcgaacctcgaaccttacatatattatgcattgtcc 36479013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 592
Target Start/End: Original strand, 37930837 - 37930903
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||||||||||| |||||||  || || || |||||||||||||| |||| |||||||||||||    
T  37930837 gtggtggtcggggtttgaacctcagaccttgcatatattatgcattgtacctaccaattgagttaag 37930903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 600
Target Start/End: Original strand, 39842018 - 39842076
Alignment:
Q  542 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||| ||| ||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  39842018 gaacctcaaaccttacatatattatgcattgtccttatcaactgagttaagatcacgag 39842076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 42344608 - 42344682
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||  ||| |||||||| || || || ||||||| |||||| |||| |||||||||||||||||||||    
T  42344608 gtggtggtcgatgtttgaacctcggaccttgcatatattatacattgttcctaccaattgagttaaggtcacgag 42344682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 725 - 778
Target Start/End: Original strand, 1866346 - 1866399
Alignment:
Q  725 aggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccat 778  Q
    ||||| |||| ||| ||||||||||||| |||||||||||||||||| ||||||    
T  1866346 aggatccgttgacactaggtgtcaatgaattcgttgacaccaaatctcaaccat 1866399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 6459925 - 6459990
Alignment:
Q  537 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    |||||||||  || || ||||| |||||||||||||||| |||||| ||||||||| |||||||||    
T  6459925 ggttcgaactccggaccttacatatattatgcattgtccatatcaactgagttaagctcacgagaa 6459990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 560 - 600
Target Start/End: Complemental strand, 13276166 - 13276126
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  13276166 atattatgcattgtccctaccaattgagttaagctcacgag 13276126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 535 - 591
Target Start/End: Complemental strand, 41536984 - 41536928
Alignment:
Q  535 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    ||||||||||| |||||| || || |||||||| ||||||| |||||||||||||||    
T  41536984 ggggttcgaacttcgaaccttgcatatattatgtattgtccttatcaattgagttaa 41536928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 600
Target Start/End: Original strand, 51436602 - 51436670
Alignment:
Q  532 gtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||  ||||| || || |||||||||||||| | |||||| ||||||||| |||||||    
T  51436602 gtcggggttcgaactccgaaccttgcatatattatgcattgttcgtatcaactgagttaagttcacgag 51436670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 560 - 600
Target Start/End: Original strand, 56309324 - 56309364
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  56309324 atattatgcattgtccatatcaattgagttaagctcacgag 56309364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 603
Target Start/End: Complemental strand, 874516 - 874453
Alignment:
Q  540 tcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||| ||||| ||| | |||||||||||||||| |||||| | ||||||| ||||||||||    
T  874516 tcgaaccacgaaccttatatatattatgcattgtccatatcaactaagttaagttcacgagaac 874453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 600
Target Start/End: Original strand, 14202472 - 14202543
Alignment:
Q  529 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||| ||||| || || ||||| |||||||||||| |||  ||||| ||||||||| |||||||    
T  14202472 gtggtcggggtttgaaccccggaccttacatatattatgcattatccaaatcaactgagttaagctcacgag 14202543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 603
Target Start/End: Complemental strand, 17134162 - 17134119
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||    
T  17134162 atattatgcattgtctctaccaattgagttaagctcacgagaac 17134119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 597
Target Start/End: Complemental strand, 30135211 - 30135140
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    ||||||||||||||| |||||||| |  | ||| |||||||||||| ||| |||||| ||||||||| ||||    
T  30135211 gtggtggtcggggtttgaacctcggatctgacatatattatgcattatccttatcaactgagttaagctcac 30135140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 34960147 - 34960194
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 573  Q
    ||||||||||||||||||||||||||  ||| | ||||||||||||||    
T  34960147 gtggtggtcggggttcgaacctcgaatcttatatatattatgcattgt 34960194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 600
Target Start/End: Original strand, 35021460 - 35021531
Alignment:
Q  529 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||||| ||||| || || || ||||| ||||||| |||||| |||| |||| |||||||    
T  35021460 gtggtcggggttcgaaccccgaaccttgcatattttatgtattgtccatatcaactgagctaagctcacgag 35021531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 600
Target Start/End: Original strand, 43034331 - 43034406
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||| ||||||| |||||||  || || || |||||||||||||||| || ||| ||||||||| |||||||    
T  43034331 ggtggtggccggggtttgaacctcagaccttgcatatattatgcattgtccataccaactgagttaagctcacgag 43034406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 24664981 - 24665055
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||||||||| || || || || |||||||||||| ||| || ||| |||| |||| |||||||    
T  24664981 gtggtggtcggggttcgaaccccggaccttgcatatattatgcattctccataccaactgagctaagctcacgag 24665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 598
Target Start/End: Complemental strand, 29910498 - 29910460
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  29910498 atattatgcattgtccttatcaattgagttaagctcacg 29910460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 592
Target Start/End: Complemental strand, 48171952 - 48171886
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||||||||||| |||||| |||| || || ||||||| ||||||| ||| ||| |||||||||    
T  48171952 gtggtggtcggggtttgaacctagaaccttgcatatattatacattgtctctaccaactgagttaag 48171886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 592
Target Start/End: Complemental strand, 56096259 - 56096209
Alignment:
Q  542 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||| ||||| ||||| |||||||||||||||| |||||| |||||||||    
T  56096259 gaaccacgaaccttacatatattatgcattgtccttatcaactgagttaag 56096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 35823446 - 35823374
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||||||| ||| ||||||  ||| || || ||||||||| |||||| |||||||||||||||| ||||||    
T  35823446 gtggtggtcggtgtt-gaaccttaaaccttgcatatattatgccttgtccatatcaattgagttaagttcacga 35823374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 41521024 - 41520959
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||||||| ||| |||||| |||| || || ||||||||||||||| ||| ||| |||||||||    
T  41521024 tggtggtcggagtttgaaccttgaaccttgcatatattatgcattgtctctaccaactgagttaag 41520959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 46434750 - 46434811
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 587  Q
    |||||| |||| ||| ||||||| ||| ||||| |||||||||||||||| |||||| ||||    
T  46434750 gtggtgatcggagtttgaacctcaaaccttacatatattatgcattgtccttatcaactgag 46434811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 599
Target Start/End: Original strand, 49952587 - 49952632
Alignment:
Q  554 ttacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||| ||||||||||||||||  ||||||||||||||| ||||||    
T  49952587 ttacatatattatgcattgtccaaatcaattgagttaagctcacga 49952632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 54500640 - 54500563
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||| | ||| ||||| || || ||||| ||||||||||||||| ||| ||| |||| |||| ||||||||||    
T  54500640 gtggtggtcagtgtttgaaccccggaccttacatatattatgcattgtctctaccaactgagctaagctcacgagaac 54500563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 583
Target Start/End: Complemental strand, 54677296 - 54677239
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaat 583  Q
    ||||||| ||| ||| ||| ||||||| ||||| |||||||||||||||| |||||||    
T  54677296 gtggtggccggagtttgaatctcgaaccttacatatattatgcattgtccatatcaat 54677239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 6e-30; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 36185671 - 36185814
Alignment:
Q  26 cattaagaagattgatgcaaacaagagaactagaataataagctagctctgtataacccaaatccttagccaataccagaccatgatatatgacagaaag 125  Q
    ||||||||||||  |||||||||||||||  | ||||| |||||| ||| |||||||||||||||| || ||  |||| |||||| ||||||| ||||||    
T  36185671 cattaagaagatatatgcaaacaagagaatcataataacaagctaactccgtataacccaaatcctcagtcatgaccaaaccatgctatatgaaagaaag 36185770  T
Q  126 tttagctaggataatatcatttgagtttggaagaaaaccagaaa 169  Q
    || |||||| |||||||| |||||||||||||||||| ||||||    
T  36185771 ttcagctagcataatatcgtttgagtttggaagaaaatcagaaa 36185814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 525 - 600
Target Start/End: Complemental strand, 29695087 - 29695012
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||| |||||||||||||||||    
T  29695087 ggtggtggtcggggtttgaaccacgaaccttacatatattatgcattgtccatatcaactgagttaaggtcacgag 29695012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 36185910 - 36185999
Alignment:
Q  247 acaagagatattattgtcgttcaatttgacatatccgttaattgtagtaacaggaacactgggagaaaagttgtttgttattacctcaat 336  Q
    |||||||| |||||||| |||| ||||||||||||  || |  ||||||||| || || |||||||||||||||||||||||||||||||    
T  36185910 acaagagagattattgttgttccatttgacatatcgattgacagtagtaacatgagcagtgggagaaaagttgtttgttattacctcaat 36185999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 608
Target Start/End: Original strand, 23118053 - 23118123
Alignment:
Q  538 gttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacctaat 608  Q
    ||||||||| | ||| ||||| |||||||||||||||| |||||| ||||||||| |||||||||| ||||    
T  23118053 gttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacgagaacataat 23118123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 8544979 - 8545056
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||||| ||||||||  || || || || |||||||||||||||| |||||| ||||||||| ||||||||||    
T  8544979 gtggtggtcggagttcgaactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaac 8545056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 600
Target Start/End: Original strand, 11637563 - 11637636
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||||||| ||||| || || || ||||||||||||| || ||| ||||||||| |||||||    
T  11637563 tggtggtcggggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacgag 11637636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 530 - 591
Target Start/End: Original strand, 37073762 - 37073823
Alignment:
Q  530 tggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| |||| || ||||||||||||    
T  37073762 tggtcggggttcgaaccccgaaccttacatatattatgcatagtccataccaattgagttaa 37073823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 598
Target Start/End: Complemental strand, 39914970 - 39914900
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||||||||||||||||| || || || || |||||||||||||||| || ||||||||||||| |||||    
T  39914970 tggtggtcggggttcgaacc-cggaccttgcatatattatgcattgtccttaccaattgagttaagctcacg 39914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 40715939 - 40716013
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||| ||||||| ||||| || || || || |||||||||||||||| ||||||||||| |||| |||||||    
T  40715939 gtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccatatcaattgagctaagctcacgag 40716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 600
Target Start/End: Original strand, 5107236 - 5107309
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||||||||||| || || || |||||||||||| | | || ||| ||||||||| |||||||    
T  5107236 tggtggtcggggttcgaacctcggaccttgcatatattatgcattattcataccaactgagttaagctcacgag 5107309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 591
Target Start/End: Original strand, 41630110 - 41630167
Alignment:
Q  534 cggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    ||||||| ||| | ||||| || || ||||||||||||||||||||||||||||||||    
T  41630110 cggggtttgaatcccgaaccttgcatatattatgcattgtccctatcaattgagttaa 41630167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 598
Target Start/End: Complemental strand, 26409323 - 26409252
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||| ||||||||||||| || || ||||| |||||||||||||||| || ||| |||| |||| |||||    
T  26409323 tggtgggcggggttcgaaccccggaccttacatatattatgcattgtccataccaactgagctaagctcacg 26409252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 741 - 779
Target Start/End: Complemental strand, 1554116 - 1554078
Alignment:
Q  741 aggtgtcaatgagttcgttgacaccaaatcttaaccatt 779  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  1554116 aggtgtcaacgaattcgttgacaccaaatcttaaccatt 1554078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 720 - 782
Target Start/End: Original strand, 4084877 - 4084939
Alignment:
Q  720 gagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccattcat 782  Q
    |||||||||| |||| |||   |||||||| || |||||||||||||||||| ||||||||||    
T  4084877 gagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccattcat 4084939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 17672289 - 17672367
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||| ||| | |||||||| ||||| ||| | ||||||||||| |||| |||||| |||| |||| ||||||||||    
T  17672289 ggtggtgatcgagattcgaaccccgaaccttatatatattatgcatcgtccttatcaactgagctaagctcacgagaac 17672367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 720 - 770
Target Start/End: Original strand, 18617437 - 18617487
Alignment:
Q  720 gagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatc 770  Q
    |||||||||| |||| | || |||||||||||| |||||||||||||||||    
T  18617437 gagtcaggatccgttgatatcaggtgtcaatgaattcgttgacaccaaatc 18617487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 592
Target Start/End: Complemental strand, 20125096 - 20125032
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||||||| ||| ||||| ||||| || || |||||||||||||||| ||||||||||||||||    
T  20125096 gtggtggtcggagtttgaacc-cgaaccttgcatatattatgcattgtcc-tatcaattgagttaag 20125032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 741 - 775
Target Start/End: Complemental strand, 22799793 - 22799759
Alignment:
Q  741 aggtgtcaatgagttcgttgacaccaaatcttaac 775  Q
    |||||||||||| ||||||||||||||||||||||    
T  22799793 aggtgtcaatgaattcgttgacaccaaatcttaac 22799759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 575
Target Start/End: Complemental strand, 26655536 - 26655486
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||||||    
T  26655536 ggtggtggccggggttcgaaccccggaccttacatatattatgcattgtcc 26655486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 575
Target Start/End: Complemental strand, 26927121 - 26927071
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    |||||||| ||||||||||||| || || ||||| ||||||||||||||||    
T  26927121 ggtggtggccggggttcgaaccccggaccttacatatattatgcattgtcc 26927071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 599
Target Start/End: Original strand, 8682412 - 8682457
Alignment:
Q  554 ttacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||| |||||||||||||||||||  || ||||||||||||||||    
T  8682412 ttacatatattatgcattgtccctactaactgagttaaggtcacga 8682457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 17071220 - 17071277
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    ||||| ||||| |||| |||| ||||||||| || |||||||||||||||||| ||||    
T  17071220 tgagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 17071277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 19128766 - 19128823
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    ||||||||||| |||| |||  ||||||||| |  |||||||||||||||||||||||    
T  19128766 tgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 19128823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Complemental strand, 19360531 - 19360474
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    ||||||||||| |||| |||  ||||||||| || |||||||||||||||| ||||||    
T  19360531 tgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatattaacc 19360474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 600
Target Start/End: Original strand, 32200438 - 32200511
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||| | ||||| || || || || |||||||||||||||||| |||| |||| |||| |||||||    
T  32200438 tggtggtcggggcttgaaccccggaccttgcatatattatgcattgtccctgtcaactgagctaagctcacgag 32200511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 37054259 - 37054320
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 587  Q
    ||||||||||| ||| ||||| ||||| ||| | ||||||||||||||||||| ||| ||||    
T  37054259 gtggtggtcggagtttgaaccccgaaccttatatatattatgcattgtccctaccaactgag 37054320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 603
Target Start/End: Original strand, 39610355 - 39610408
Alignment:
Q  550 aacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||||| || |||||||||||||||| |||||| |||| |||| ||||||||||    
T  39610355 aacattgcatatattatgcattgtccatatcaactgagctaagctcacgagaac 39610408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 40027754 - 40027831
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||||| |||| |||| |||| ||||  ||||| |||||||||||||||| |  ||| ||||||||| ||||||||||    
T  40027754 gtggtgatcggagttcaaaccccgaattttacatatattatgcattgtccatgccaactgagttaagctcacgagaac 40027831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 587
Target Start/End: Complemental strand, 41266457 - 41266396
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 587  Q
    ||||||||||||||  ||||| ||||| ||||| ||||||||  |||||| |||||||||||    
T  41266457 gtggtggtcggggtgtgaaccccgaaccttacatatattatgttttgtccttatcaattgag 41266396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 4e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 46 - 339
Target Start/End: Complemental strand, 21377666 - 21377354
Alignment:
Q  46 acaagagaactagaataataagctagctctgtataacccaaatccttagccaataccagaccatgatatatgacagaaagtttagctaggataatatcat 145  Q
    |||||||||  | ||||| ||||||| |||| |||||||||||| |||||||  |||||||||||||| ||| |||||| || |||||| ||||||||||    
T  21377666 acaagagaatcaaaataacaagctagttctgaataacccaaatcattagccatgaccagaccatgataaatggcagaaaattcagctagcataatatcat 21377567  T
Q  146 ttgagtttggaagaaaaccagaaaccccgcnnnnnnncaaacctgaattattttgcaaaaccccctctaaaccctactcaaagaggagtaccatggcagc 245  Q
     |||||||||||||||| |||||| |||||       |||||||||||||||   ||||| ||||||||| | ||  |   |||||||||||||||||||    
T  21377566 atgagtttggaagaaaatcagaaaacccgc-aagaaacaaacctgaattattacacaaaa-cccctctaatctctgttatgagaggagtaccatggcagc 21377469  T
Q  246 tac---------------------aagagatattattgtcgttcaatttgacatatccgttaattgtagtaacaggaacactgggagaaaagttgtttgt 324  Q
    |||                     |||||| |||||||| |||| |||||||||||| ||||| || ||||||| || || |||||| ||||||||||||    
T  21377468 taccgtcaacattcaaaataacataagagagattattgttgttccatttgacatatcggttaactggagtaacaagagcagtgggagtaaagttgtttgt 21377369  T
Q  325 tattacctcaattga 339  Q
    |||||||||||||||    
T  21377368 tattacctcaattga 21377354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 8629686 - 8629759
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    |||||||||| |||| ||||| ||||| || || |||||||||||||||| || ||||||||||||| ||||||    
T  8629686 gtggtggtcgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagttaagctcacga 8629759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 24623307 - 24623368
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 587  Q
    ||||||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||| ||||    
T  24623307 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgtccatatcaactgag 24623368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 600
Target Start/End: Complemental strand, 5632206 - 5632131
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||||||||  ||||  ||| | ||||||| |||||| |||| ||||||||||||| |||||||    
T  5632206 ggtggtggtcggggttcgaacgccgaatcttatatatattatacattgttcctaccaattgagttaagctcacgag 5632131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 602
Target Start/End: Original strand, 32524411 - 32524486
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    ||||||| |||||| |||||  | || || || ||||||||||||||||||| ||||||||||||| |||||||||    
T  32524411 tggtggttggggtttgaaccctggactttgcatatattatgcattgtccctaccaattgagttaagctcacgagaa 32524486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 4826361 - 4826288
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||| ||| ||| ||||||||||| ||||| ||||||||||||||| ||| |||||||  |||| ||||||    
T  4826361 gtggtggccggagtttgaacctcgaaccttacatatattatgcattgtctctaccaattgaactaagttcacga 4826288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 602
Target Start/End: Complemental strand, 10278525 - 10278448
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    ||||||||| ||||||||||| ||  |  || || |||||||||||||||| |||||||||||||||| | |||||||    
T  10278525 ggtggtggttggggttcgaacttcagatcttgcatatattatgcattgtccatatcaattgagttaagtttacgagaa 10278448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 12232172 - 12232233
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 587  Q
    ||||||||||||||||||||| |  ||| | || ||||||||||||||||||||||| ||||    
T  12232172 gtggtggtcggggttcgaaccccagacactgcatatattatgcattgtccctatcaactgag 12232233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 535 - 599
Target Start/End: Complemental strand, 404225 - 404161
Alignment:
Q  535 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||||||||||| ||||| || |||||||||||||||| || ||| | ||||||| ||||||    
T  404225 ggggttcgaacctcggacattgcatatattatgcattgtccttaccaactaagttaagctcacga 404161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 28758815 - 28758867
Alignment:
Q  551 acattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||| || ||||||||| |||||||||| |||||||||||| ||||||||||    
T  28758815 acattgcatatattatgctttgtccctattaattgagttaagctcacgagaac 28758867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 2426719 - 2426758
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  2426719 atattatgcattgtctctatcaattgagttaaggttacga 2426758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 592
Target Start/End: Complemental strand, 2445371 - 2445304
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||||||||||||||||||| ||||  ||  | |||||||||||||| | |||||| |||||||||    
T  2445371 ggtggtggtcggggttcgaaccccgaatcttgtatatattatgcattgttcatatcaactgagttaag 2445304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 603
Target Start/End: Complemental strand, 4553773 - 4553730
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||    
T  4553773 atattaagcattgtccgtatcaattgagttaagttcacgagaac 4553730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 15170002 - 15169955
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 573  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  15170002 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 15178774 - 15178727
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 573  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  15178774 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 600
Target Start/End: Complemental strand, 19277634 - 19277571
Alignment:
Q  537 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||  |||| ||||  |||||||||||||| |||||||| ||||||||| |||||||    
T  19277634 ggttcgaaccctgaaccttacctatattatgcattgttcctatcaactgagttaagttcacgag 19277571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Complemental strand, 788937 - 788863
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||| ||||  ||||| || || |||||||||||||||| || ||| |||| |||| |||||||    
T  788937 gtggtggtcggggtttgaactccgaaccttgcatatattatgcattgtccttaccaactgagataagctcacgag 788863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 599
Target Start/End: Complemental strand, 29069551 - 29069481
Alignment:
Q  529 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    |||| ||||||| |||||||  || || || ||||||||||||||||||||||| |||| |||| ||||||    
T  29069551 gtggccggggtttgaacctcagacttttcatatattatgcattgtccctatcaactgagctaagctcacga 29069481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 591
Target Start/End: Complemental strand, 8569780 - 8569715
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    ||||||| ||||||| ||||| || || || || |||||||||||||||| || ||||||||||||    
T  8569780 gtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaattgagttaa 8569715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 16390499 - 16390426
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||| || |||| ||||| || || ||||| ||||||||||||||||||| ||| |||| |||| |||||||    
T  16390499 tggtggccgaggtttgaaccccggaccttacatatattatgcattgtccctaccaactgaggtaagctcacgag 16390426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 24212554 - 24212595
Alignment:
Q  551 acattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||||| |||||||||||||||| |||||| |||||||||    
T  24212554 acattacatatattatgcattgtccatatcaactgagttaag 24212595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 600
Target Start/End: Original strand, 35142138 - 35142213
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||||||||||| ||| || || |||||||||||||||| |||||| |||| |||| |||||||    
T  35142138 ggtggtggtcggggttcgaacctcaaactttgcatatattatgcattgtccatatcaactgagctaagctcacgag 35142213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 7388029 - 7388103
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||| ||| | ||||| ||||| ||||||||||||||||| | ||| ||||||||| |||||||    
T  7388029 gtggtggtcggggtttgaatcccgaaccttacatatattatgcattgtcccaaccaactgagttaagctcacgag 7388103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 526 - 597
Target Start/End: Complemental strand, 21105674 - 21105603
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    ||||||||||||||||||||||||||| || || |||||||||||| ||| || ||| |||| |||| ||||    
T  21105674 gtggtggtcggggttcgaacctcgaaccttgcatatattatgcattttccataccaactgagctaagctcac 21105603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 720 - 778
Target Start/End: Complemental strand, 25343294 - 25343236
Alignment:
Q  720 gagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccat 778  Q
    |||||||||| |||| |||  |||||||||||| |||||||||||||||||| ||||||    
T  25343294 gagtcaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccat 25343236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 575
Target Start/End: Original strand, 42227794 - 42227844
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    |||||||||||| ||| ||||||||||| ||||| ||||||||||||||||    
T  42227794 ggtggtggtcggagtttgaacctcgaaccttacatatattatgcattgtcc 42227844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 602
Target Start/End: Complemental strand, 21580859 - 21580811
Alignment:
Q  554 ttacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    ||||| |||||||||||||||| |||||||||||||||| | |||||||    
T  21580859 ttacatatattatgcattgtccatatcaattgagttaagcttacgagaa 21580811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 597
Target Start/End: Complemental strand, 23221464 - 23221392
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    ||||||||| || ||| ||||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||| ||||    
T  23221464 ggtggtggttggagtttgaaccacgaaccttacatatattatgcattgtctctaccaactgagttaagctcac 23221392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 770
Target Start/End: Complemental strand, 15305296 - 15305245
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatc 770  Q
    ||||||||||| | || |||| |||||||||||| |||||||||||||||||    
T  15305296 tgagtcaggatccattgacatcaggtgtcaatgaattcgttgacaccaaatc 15305245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 597
Target Start/End: Original strand, 26713112 - 26713154
Alignment:
Q  554 ttacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  26713112 ttacatatattatgcattgtcc-tatcaattgagttaaggtcac 26713154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 592
Target Start/End: Original strand, 40187625 - 40187692
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||| |||||||| ||||| |  || ||||| ||||||||||||||||||| ||| |||||||||    
T  40187625 ggtggtgttcggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaag 40187692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 741 - 779
Target Start/End: Original strand, 1417626 - 1417664
Alignment:
Q  741 aggtgtcaatgagttcgttgacaccaaatcttaaccatt 779  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  1417626 aggtgtcaacgaattcgttgacaccaaatcttaaccatt 1417664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 7994873 - 7994951
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||||||||||||||| ||||| |  || ||||| ||||||||  ||||||||| ||| ||||||| | ||||||||||    
T  7994873 ggtggtggtcggggtttgaaccccagaccttacatatattatgttttgtccctaccaactgagttatgctcacgagaac 7994951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 575
Target Start/End: Original strand, 27833390 - 27833440
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    |||||||||||||||| ||||| || || ||||| ||||||||||||||||    
T  27833390 ggtggtggtcggggtttgaaccccggaccttacatatattatgcattgtcc 27833440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 741 - 779
Target Start/End: Complemental strand, 38226009 - 38225971
Alignment:
Q  741 aggtgtcaatgagttcgttgacaccaaatcttaaccatt 779  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  38226009 aggtgtcaacgaattcgttgacaccaaatcttaaccatt 38225971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 39926539 - 39926601
Alignment:
Q  537 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    |||| ||||| |||||||| || |||||||||||||||| |||||| |||| |||| ||||||    
T  39926539 ggtttgaaccccgaacattgcatatattatgcattgtccttatcaactgagctaagctcacga 39926601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 45425525 - 45425459
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    |||||||| |||| |||||||| ||||| || || |||||||||||||||  |||||| ||||||||    
T  45425525 ggtggtggccgggattcgaaccccgaaccttgcatatattatgcattgtctttatcaactgagttaa 45425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 592
Target Start/End: Complemental strand, 48837938 - 48837872
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||| ||||||||||||| | ||| || || |||||||||||| ||| || |||||||||||||    
T  48837938 gtggtggccggggttcgaaccccaaactttgcatatattatgcattatccataccaattgagttaag 48837872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 429168 - 429245
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||||||||||| ||  | ||| || || |||||||| ||| ||| |||||| ||||||||| ||||||||||    
T  429168 gtggtggtcggggttcggactccaaaccttgcatatattatgtattatccatatcaactgagttaagctcacgagaac 429245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 782
Target Start/End: Original strand, 7668480 - 7668541
Alignment:
Q  721 agtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccattcat 782  Q
    ||||||||| |||| |||  ||||||||| |  |||||||||||||||||| ||||||||||    
T  7668480 agtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcat 7668541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 7908660 - 7908615
Alignment:
Q  530 tggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    ||||||||||||||||| ||||| ||||| || |||||||||||||    
T  7908660 tggtcggggttcgaaccccgaaccttacatattttatgcattgtcc 7908615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 8903657 - 8903698
Alignment:
Q  551 acattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||||| |||| ||||||||||| ||||||||||||||||    
T  8903657 acattacatatatcatgcattgtccttatcaattgagttaag 8903698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 24099226 - 24099302
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||||||||||| ||| |||| ||||| ||||| ||||||||||||||   ||||||||||| | || ||||||||||    
T  24099226 gtggtggtcggg-ttcaaaccccgaaccttacatatattatgcattgtttatatcaattgagcttagttcacgagaac 24099302  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 28200375 - 28200448
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||||||| ||| ||||||||||  || || |||||||| ||||| |||| ||| ||||||||| ||||||    
T  28200375 gtggtggtcggagtttgaacctcgaattttgcatatattatgtattgttcctaccaactgagttaagctcacga 28200448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 30397140 - 30397091
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    |||||||||||||||| |||| ||||| ||||| || |||||||||||||    
T  30397140 gtggtggtcggggttcaaaccccgaaccttacatattttatgcattgtcc 30397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 32315294 - 32315217
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||| |||||||||||  |||| || || |||||||| | ||||| |||||| ||||||||| ||||| ||||    
T  32315294 gtggtggtcagggttcgaaccctgaaccttgcatatattatgtaatgtccttatcaactgagttaagctcacgtgaac 32315217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 781
Target Start/End: Original strand, 40273557 - 40273618
Alignment:
Q  720 gagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccattca 781  Q
    |||| ||||| |||| |||  |||||||||||| |||||||||||||||||| |||| ||||    
T  40273557 gagttaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgttca 40273618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 7464481 - 7464555
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||| ||||| || || ||||| ||||||||||||||||||| ||| ||||||||| |||||||    
T  7464481 gtggtggtcggggtttgaaccccggaccttacatatattatgcattgtccctaccaactgagttaagctcacgag 7464555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 525 - 598
Target Start/End: Complemental strand, 7651258 - 7651185
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||||||||| ||| ||||| ||||| ||| | ||| ||||||||||||||||||| ||||||||| |||||    
T  7651258 ggtggtggtcggcgtttgaaccccgaaccttatatatactatgcattgtccctatcaactgagttaagctcacg 7651185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 47039498 - 47039421
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||||||||||| |||||||| ||||| || || |||||||||||||||| |||||  ||||||||| ||||| ||||    
T  47039498 gtggtggtcgggattcgaaccccgaactttgcatatattatgcattgtccttatcatctgagttaagctcacgggaac 47039421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 582
Target Start/End: Original strand, 48657807 - 48657863
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaa 582  Q
    ||||||||||||||||||||| ||||  ||||| |||||||| ||||||||||||||    
T  48657807 gtggtggtcggggttcgaaccccgaatcttacatatattatggattgtccctatcaa 48657863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 550 - 598
Target Start/End: Complemental strand, 22462359 - 22462311
Alignment:
Q  550 aacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    ||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  22462359 aacattacatatattatgcattgtccttatcaactgagttaagctcacg 22462311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 779
Target Start/End: Complemental strand, 46150784 - 46150725
Alignment:
Q  720 gagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccatt 779  Q
    |||||||||| |||| ||| |||||||||| |  |||||||||||||||||| |||||||    
T  46150784 gagtcaggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaaccatt 46150725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Complemental strand, 7827579 - 7827505
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||| |||||||  |  || ||||| |||||||||||||||| |||||| ||||||||  |||||||    
T  7827579 gtggtggtcgggtttcgaactccagaccttacatatattatgcattgtccatatcaactgagttaaactcacgag 7827505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Complemental strand, 7829967 - 7829893
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||  ||||||| ||  || ||||| |||||||||||||||| |||||| ||||||||  |||||||    
T  7829967 gtggtggtcggatttcgaacttcagaccttacatatattatgcattgtccatatcaactgagttaaactcacgag 7829893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 591
Target Start/End: Original strand, 25485481 - 25485523
Alignment:
Q  549 gaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    |||||||||| |||||||||||||||  |||||||||||||||    
T  25485481 gaacattacatatattatgcattgtctatatcaattgagttaa 25485523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 48209200 - 48209262
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 587  Q
    |||||||||||||||| |||||  |||| ||| | |||||||| |||||||||||||| ||||    
T  48209200 ggtggtggtcggggtttgaaccctgaaccttatatatattatgtattgtccctatcaactgag 48209262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Original strand, 52453246 - 52453300
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctat 579  Q
    |||||||| || |||| ||||||||||| || || ||||||||||||||||||||    
T  52453246 ggtggtggacgaggtttgaacctcgaactttgcatatattatgcattgtccctat 52453300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 780
Target Start/End: Original strand, 13477054 - 13477115
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccattc 780  Q
    ||||||||||| |||| |||  ||||||||| || ||| ||||||||||||| |||||||||    
T  13477054 tgagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatcctaaccattc 13477115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 27082773 - 27082830
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    ||||||||||| | || ||| |||||||||| || ||||||||||||||||| |||||    
T  27082773 tgagtcaggatccattgacactaggtgtcaacgaattcgttgacaccaaatcctaacc 27082830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 34899167 - 34899094
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||| ||||| || || || || |||||||||||||||||||  || |||| |||| |||||||    
T  34899167 tggtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctacgaactgagctaagatcacgag 34899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 46226077 - 46226141
Alignment:
Q  535 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||| || || || || ||||||||||||||||||| ||||||||||||  |||||||    
T  46226077 ggggttcgaacc-cggaccttgcatatattatgcattgtccctaccaattgagttaaactcacgag 46226141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 48648200 - 48648257
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    ||||||||||| |||| |||  ||||||||| |  |||||||||||||||||||||||    
T  48648200 tgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaacc 48648257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 48764474 - 48764531
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    ||||||||||| | || |||| ||||||||| || |||||||||||||||||| ||||    
T  48764474 tgagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 48764531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 52119446 - 52119381
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||| ||||||||||||| ||||| || || |||||||||||||||| || ||| |||| ||||    
T  52119446 tggtggccggggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaag 52119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 526 - 602
Target Start/End: Original strand, 31815877 - 31815953
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    ||||||||||||||| ||||| || || || || ||||||||||||||||||| ||| ||||||||| |||||||||    
T  31815877 gtggtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagttaagctcacgagaa 31815953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 603
Target Start/End: Complemental strand, 1238199 - 1238156
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  1238199 atattatgcattgtccctatcaattgagttaagctcacgagaac 1238156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 597
Target Start/End: Original strand, 31397778 - 31397850
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    |||||||| ||||||||||| |||| || ||||| || |||||||||||||||| |||||||| |||| ||||    
T  31397778 ggtggtggccggggttcgaatctcggaccttacatattttatgcattgtccctaccaattgagctaagctcac 31397850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 592
Target Start/End: Original strand, 5168568 - 5168635
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||| ||||||||| ||||| ||||| || || |||||||||||| |||||||||| |||||||||    
T  5168568 ggtggtagtcggggtttgaaccccgaaccttgcatatattatgcattatccctatcaactgagttaag 5168635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 592
Target Start/End: Original strand, 9547398 - 9547465
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||||||||||||| ||||| | ||| || || |||||||||||||||| |||||| |||||||||    
T  9547398 ggtggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtccatatcaactgagttaag 9547465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 4238830 - 4238781
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtcc 575  Q
    ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  4238830 gtggtggtcggagttcgaaccccgaaccttacatatattatgcattgtcc 4238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 9519720 - 9519781
Alignment:
Q  542 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||| |||||| || || |||||||||||||||| ||||||||||| |||| ||||||||||    
T  9519720 gaacttcgaaccttgcatatattatgcattgtccatatcaattgagctaagctcacgagaac 9519781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 599
Target Start/End: Original strand, 40967365 - 40967434
Alignment:
Q  530 tggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    |||||| |||| ||||||| ||| || || |||||||||||||||| |||||| ||||||||| ||||||    
T  40967365 tggtcgaggtttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaagctcacga 40967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 719 - 779
Target Start/End: Original strand, 9540328 - 9540388
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccatt 779  Q
    |||| |||||| |||| |||  ||||||||| || ||||||||||||||||||||||||||    
T  9540328 tgagacaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatt 9540388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 526 - 602
Target Start/End: Original strand, 20565065 - 20565141
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    |||||||| |||||| ||||| || || || || ||||||||||||||||||| ||| |||| |||| |||||||||    
T  20565065 gtggtggttggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagaa 20565141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 597
Target Start/End: Complemental strand, 29544699 - 29544627
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    |||||||| ||||||| ||||| || || || || ||||||||||||||||||| |||||||| |||| ||||    
T  29544699 ggtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccctaccaattgagctaagctcac 29544627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 778
Target Start/End: Complemental strand, 9276385 - 9276326
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccat 778  Q
    ||||||||||| |||| |||  ||||||||| || |||||||||||||||||| ||||||    
T  9276385 tgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccat 9276326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 24581007 - 24581054
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgt 573  Q
    ||||||||||||||| ||||||||||| || || ||||||||||||||    
T  24581007 gtggtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 592
Target Start/End: Original strand, 25395431 - 25395498
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||||||||| || |||||| |||| || || |||||||||||||| |||| ||| |||||||||    
T  25395431 ggtggtggtcgggatttgaaccttgaaccttgcatatattatgcattgttcctaccaactgagttaag 25395498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 598
Target Start/End: Complemental strand, 28202359 - 28202296
Alignment:
Q  535 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||| |||| ||| || ||||| ||||||||||||||||||||||| |||| |||| |||||    
T  28202359 ggggtttgaacttcggaccttacatatattatgcattgtccctatcaactgagctaagctcacg 28202296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 597
Target Start/End: Original strand, 36264469 - 36264540
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    ||||||||||||||| ||||| ||||| || || |||||||||||| ||| || ||||||| ||||| ||||    
T  36264469 gtggtggtcggggtttgaaccccgaactttgcatatattatgcattatccataccaattgaattaagctcac 36264540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 778
Target Start/End: Original strand, 38361064 - 38361123
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccat 778  Q
    |||| |||||| |||| |||| ||||||||| || |||||||||||||||||| ||||||    
T  38361064 tgagacaggatacgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccat 38361123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 720 - 778
Target Start/End: Original strand, 1296377 - 1296435
Alignment:
Q  720 gagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaaccat 778  Q
    |||||||||| |||| |||  ||||||||| || |||||||||||||||||| ||||||    
T  1296377 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccat 1296435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Complemental strand, 2257042 - 2256968
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||| ||||||||||||| |  || || || |||||||||||||||| || ||| ||||||||| |||||||    
T  2257042 gtggtggccggggttcgaaccccagaccttgcatatattatgcattgtccataccaactgagttaagctcacgag 2256968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 14735883 - 14735957
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||| ||| ||| ||||||||||| ||||| || ||||||||||||| || ||||| || |||| |||||||    
T  14735883 gtggtggccggagtttgaacctcgaaccttacatattttatgcattgtccataccaattaagctaagctcacgag 14735957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 598
Target Start/End: Complemental strand, 20239380 - 20239342
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  20239380 atattatgcattatccctatcaattgagttaagctcacg 20239342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Complemental strand, 20455962 - 20455888
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||| |||| |||||||| || || || || |||||||||||||||| || |||||||| |||| |||||||    
T  20455962 gtggtggccgggattcgaaccccggaccttgcatatattatgcattgtccataccaattgagctaagctcacgag 20455888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 741 - 779
Target Start/End: Complemental strand, 22301903 - 22301865
Alignment:
Q  741 aggtgtcaatgagttcgttgacaccaaatcttaaccatt 779  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  22301903 aggtgtcaacgaattcgttgacaccaaatcttaaccatt 22301865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 27412826 - 27412900
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||| ||||  |  || ||||| ||||||||||||||| ||| ||| ||||||||| |||||||    
T  27412826 gtggtggtcggggtttgaacaacagaccttacatatattatgcattgtctctaccaactgagttaagctcacgag 27412900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 29798507 - 29798581
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||||||||||| |  || ||| | || ||||||||||||| || ||| ||||||||| |||||||    
T  29798507 gtggtggtcggggttcgaacccctgaccttaaatattttatgcattgtccataccaactgagttaagctcacgag 29798581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 592
Target Start/End: Complemental strand, 29809397 - 29809331
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||| |||| |||||||| || || || || ||||||||||||||||||| ||| |||||||||    
T  29809397 gtggtggccgggattcgaaccccgtacctttcatatattatgcattgtccctaccaactgagttaag 29809331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Original strand, 31837926 - 31838000
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||| |||| ||| | ||||| ||||| ||||||| |||| ||| || ||||||||||||| |||||||    
T  31837926 gtggtggtcgaggtttgaatcccgaaccttacatatattatacattatccataccaattgagttaagttcacgag 31838000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 602
Target Start/End: Complemental strand, 34242859 - 34242817
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    |||||||||||||||||||||||||||| |||| ||| |||||    
T  34242859 atattatgcattgtccctatcaattgagctaagctcatgagaa 34242817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 600
Target Start/End: Original strand, 40295456 - 40295522
Alignment:
Q  534 cggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||| ||||||||||  || || | |||||||||||| | |||||||||||||||| |||||||    
T  40295456 cggggtttgaacctcgaatcttgcatacattatgcattgttcatatcaattgagttaagttcacgag 40295522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 600
Target Start/End: Complemental strand, 44026663 - 44026605
Alignment:
Q  542 gaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||| ||||| ||||| ||||||||| |||||| || ||||||||||||| |||||||    
T  44026663 gaaccccgaaccttacatatattatgcgttgtccataccaattgagttaagctcacgag 44026605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 776
Target Start/End: Complemental strand, 18174725 - 18174668
Alignment:
Q  719 tgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    ||||| ||||| |||| |||| ||||||||| || |||||||||||||||||| ||||    
T  18174725 tgagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaacc 18174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 591
Target Start/End: Complemental strand, 27935127 - 27935062
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    |||||||  ||||||||||||||| || || || ||||| ||||||||||||| ||| ||||||||    
T  27935127 gtggtggctggggttcgaacctcgtaccttgcatatattctgcattgtccctaccaactgagttaa 27935062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 30045524 - 30045447
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||| || |||| ||| ||||||| ||  | ||||||||||||||||||| |||||||| |||| |||| |||||    
T  30045524 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcaccagaac 30045447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 30050687 - 30050610
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||| || |||| ||| ||||||| ||  | ||||||||||||||||||| |||||||| |||| |||| |||||    
T  30050687 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcaccagaac 30050610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 30141731 - 30141654
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||| || |||| ||| ||||||| ||  | ||||||||||||||||||| |||||||| |||| |||| |||||    
T  30141731 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcaccagaac 30141654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 598
Target Start/End: Original strand, 37320518 - 37320579
Alignment:
Q  537 ggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||||||||||||| || || |||||||||||||||  || ||| ||||||||| |||||    
T  37320518 ggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacg 37320579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 591
Target Start/End: Complemental strand, 39555490 - 39555426
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    |||||||||||||||||||||||  ||  |||| ||||||| |||| ||| |||||||||||||||    
T  39555490 gtggtggtcggggttcgaacctcataccatacatatattat-cattctccttatcaattgagttaa 39555426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 526 - 597
Target Start/End: Original strand, 33153870 - 33153941
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    |||||| |||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  33153870 gtggtgttcggggtttgaacctcggaccttacatatattatgcattgtccctaccaactgagttaagctcac 33153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 600
Target Start/End: Complemental strand, 37705193 - 37705122
Alignment:
Q  529 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||| ||||||||||||| |||||| || |||||||||||||||| || || |||||||||| |||||||    
T  37705193 gtggtcagggttcgaacctcaaacattgcatatattatgcattgtccataccagttgagttaagttcacgag 37705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 598
Target Start/End: Complemental strand, 10293007 - 10292935
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||||||||||||  |||| ||  | ||||| ||||||||||||||||||||||| ||||||||| |||||    
T  10293007 gtggtggtcggggtttaaaccccgtcccttacatatattatgcattgtccctatcaactgagttaagctcacg 10292935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 529 - 600
Target Start/End: Complemental strand, 2613790 - 2613719
Alignment:
Q  529 gtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||||| ||||| ||||| || ||||||||||||| || ||| |||| |||| |||||||    
T  2613790 gtggtcggggttcgaaccccgaaccttacatattttatgcattgtccataccaactgagctaagctcacgag 2613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 600
Target Start/End: Complemental strand, 27533315 - 27533240
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||| ||||| ||||| || || ||||||||||||||||||| ||| |||  |||| |||||||    
T  27533315 ggtggtggtcggggtttgaaccccgaaccttgcatatattatgcattgtccctaccaactgatctaagctcacgag 27533240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 3777790 - 3777712
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||||| |||| ||||||||||| ||  | ||||||| |||| ||| |||||| ||||||||| ||||||||||    
T  3777790 ggtggtggtcgaggtttgaacctcgaaccttgtatatattatacattatccatatcaactgagttaagctcacgagaac 3777712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 582
Target Start/End: Complemental strand, 13401666 - 13401612
Alignment:
Q  528 ggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaa 582  Q
    ||||||||||||| ||||| ||||| ||||| ||||||||||||||| |||||||    
T  13401666 ggtggtcggggtttgaaccccgaaccttacatatattatgcattgtctctatcaa 13401612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Complemental strand, 14768878 - 14768800
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaa-cattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||||||||| ||||| |||| | ||||| ||||||| ||||||||||| ||| ||||| ||| ||||||||||    
T  14768878 gtggtggtcggggtttgaaccccgaaactttacatatattatacattgtccctaccaactgagtcaagctcacgagaac 14768800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 592
Target Start/End: Complemental strand, 41973326 - 41973260
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||| ||||||||||||| || || || || ||||||||||||||||||| ||||| |||||||    
T  41973326 gtggtggccggggttcgaaccccggaccttgcatatattatgcattgtccctaccaattaagttaag 41973260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 3431400 - 3431327
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||| |||||||| ||||| || |||||||||||| | |||| ||| ||||||||  |||||||    
T  3431400 tggtggtcggggtttgaacctcgtacattgcatatattatgcattcttcctaccaactgagttaaactcacgag 3431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 591
Target Start/End: Original strand, 22388165 - 22388230
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    |||||||| || ||| ||| ||||||| ||||| ||||||||||||||||||||||| | ||||||    
T  22388165 gtggtggttggagtttgaatctcgaacgttacatatattatgcattgtccctatcaactaagttaa 22388230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 560 - 600
Target Start/End: Original strand, 2884472 - 2884512
Alignment:
Q  560 atattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  2884472 atattatgcattgtccatatcaactgagttaaggtcacgag 2884512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 592
Target Start/End: Original strand, 18056712 - 18056772
Alignment:
Q  532 gtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||||||||||||||  ||||| || |||||||||||||||| || ||| |||||||||    
T  18056712 gtcggggttcgaacctcacacattgcatatattatgcattgtccttaccaactgagttaag 18056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 599
Target Start/End: Complemental strand, 12212364 - 12212293
Alignment:
Q  528 ggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||||||||| ||||| || || || || |||||||||||| |||||| ||| ||||||||| ||||||    
T  12212364 ggtggtcggggtttgaaccccggacgttgcatatattatgcattatccctaccaaatgagttaagctcacga 12212293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 600
Target Start/End: Original strand, 17139506 - 17139581
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||| ||||| || || ||  | ||||||||||||||||||| ||| |||| |||| |||||||    
T  17139506 ggtggtggtcggggtttgaaccccggaccttgaatatattatgcattgtccctaccaactgagctaagctcacgag 17139581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 600
Target Start/End: Original strand, 30678826 - 30678877
Alignment:
Q  549 gaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||| ||||| ||||||||||||||||||| ||| ||||||||| |||||||    
T  30678826 gaaccttacatatattatgcattgtccctaccaactgagttaagctcacgag 30678877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 775
Target Start/End: Complemental strand, 50271838 - 50271783
Alignment:
Q  720 gagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaac 775  Q
    |||||||||| |||| |||  |||| ||||||| ||||||||||||||||||||||    
T  50271838 gagtcaggatccgttgacaccaggtatcaatgaattcgttgacaccaaatcttaac 50271783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 21041416 - 21041338
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||  |||||||||||||| |||||| || || ||||||||||||| || ||| |||| |||  ||||||||||    
T  21041416 ggtggtggctggggttcgaacctcaaacatttcatattttatgcattgtccataccaactgaggtaaactcacgagaac 21041338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 591
Target Start/End: Complemental strand, 28341217 - 28341187
Alignment:
Q  561 tattatgcattgtccctatcaattgagttaa 591  Q
    |||||||||||||||||||||||||||||||    
T  28341217 tattatgcattgtccctatcaattgagttaa 28341187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 592
Target Start/End: Complemental strand, 29042608 - 29042542
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    |||||||||||| || ||||| || |  ||||| |||||||||||| |||||| |||||||||||||    
T  29042608 gtggtggtcgggatttgaaccccggatcttacatatattatgcattatccctaccaattgagttaag 29042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 15382809 - 15382886
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||| |||| ||||||||||| || || || ||||||| |||||| | |||||| ||||||||| |||| |||||    
T  15382809 gtggtggccgggtttcgaacctcggaccttgcatatattatacattgttcatatcaactgagttaagctcacaagaac 15382886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 16967184 - 16967257
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||| ||| ||| ||||||||||| || || |||||||||||||||| |||||| | || |||| ||||||    
T  16967184 gtggtggccggagtttgaacctcgaaccttgcatatattatgcattgtccatatcaactaagctaagctcacga 16967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 17917128 - 17917189
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgag 587  Q
    ||||||||||||||| ||| | ||||| ||||| || ||||||||||||| |||||| ||||    
T  17917128 gtggtggtcggggtttgaatcccgaaccttacatattttatgcattgtccatatcaactgag 17917189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 18091237 - 18091200
Alignment:
Q  563 ttatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18091237 ttatgcattgtccctatcaactgagttaagctcacgag 18091200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 21557503 - 21557430
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||| ||||||||||| || ||||| |||||||||||||||| ||  || ||||||||| |||||||    
T  21557503 tggtggtcgggattcgaacctcggaccttacatatattatgcattgtccatactaactgagttaagctcacgag 21557430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 597
Target Start/End: Complemental strand, 23159511 - 23159441
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||||| ||| |||||||||||| ||||    
T  23159511 tggtggtcggggtttgaaccccgaatcttgcatatattatgcattgtccatatgaattgagttaagttcac 23159441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 11709056 - 11708983
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||||||||| |||| ||| || || || ||||||||||||||||||| ||| |||| |||| |||||||    
T  11709056 tggtggtcggggtttgaacttcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 11708983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 605
Target Start/End: Complemental strand, 6471583 - 6471503
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaacct 605  Q
    |||||||| ||||||| ||||| |||||||| || |||||||||||||| ||||||   ||||||||  ||||||| ||||    
T  6471583 ggtggtggccggggtttgaaccccgaacattgcatatattatgcattgttcctatcggctgagttaaactcacgaggacct 6471503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 526 - 602
Target Start/End: Original strand, 12938917 - 12938993
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaa 602  Q
    |||||||||||||||  ||  |||||| ||  | |||||||||||||||||||||| |||||||||| | |||||||    
T  12938917 gtggtggtcggggtttaaatttcgaaccttgtatatattatgcattgtccctatcagttgagttaagtttacgagaa 12938993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 599
Target Start/End: Original strand, 13272537 - 13272585
Alignment:
Q  551 acattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    |||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  13272537 acattacatatattatgcattgtccatatcaactgagttaagttcacga 13272585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 592
Target Start/End: Complemental strand, 18959210 - 18959154
Alignment:
Q  536 gggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||| ||||||||||| || || |||||||||||| |||||| |||||||||||||    
T  18959210 gggtttgaacctcgaaccttgcatatattatgcattatccctaacaattgagttaag 18959154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 526 - 598
Target Start/End: Original strand, 34420852 - 34420924
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    |||||||||| |||| ||||||| ||| || || || ||||||||||||| || ||||||||||||| |||||    
T  34420852 gtggtggtcgaggtttgaacctcaaaccttgcatattttatgcattgtccataccaattgagttaagctcacg 34420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Original strand, 3456833 - 3456884
Alignment:
Q  548 cgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||| ||||| |||||||||||||| | |||||||||||||||| ||||||    
T  3456833 cgaaccttacatatattatgcattgttcatatcaattgagttaagttcacga 3456884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 600
Target Start/End: Original strand, 13357430 - 13357505
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    |||||||| || |||| |||||||| || || || |||||||||||||||| || ||| ||||||||| |||||||    
T  13357430 ggtggtggccgaggtttgaacctcgtaccttgcatatattatgcattgtccataccaactgagttaagctcacgag 13357505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 600
Target Start/End: Complemental strand, 9241086 - 9241012
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||| ||||||| |||| ||| || ||||| |||||||||||||| | || ||||||| ||||| |||||||    
T  9241086 gtggtggccggggtttgaacatcggaccttacatatattatgcattgtacttaccaattgatttaagctcacgag 9241012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 536 - 598
Target Start/End: Original strand, 16843523 - 16843585
Alignment:
Q  536 gggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacg 598  Q
    ||||||||||| ||||| || || ||||||| |||||||| ||||||| |||||||| |||||    
T  16843523 gggttcgaaccacgaaccttgcatatattatacattgtccttatcaatcgagttaagctcacg 16843585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 718 - 776
Target Start/End: Complemental strand, 26654434 - 26654376
Alignment:
Q  718 ttgagtcaggattcgtttacattaggtgtcaatgagttcgttgacaccaaatcttaacc 776  Q
    |||||||| ||| |||| |||  |||||||||||  |||||||||||||||||||||||    
T  26654434 ttgagtcaagatccgttgacaccaggtgtcaatggattcgttgacaccaaatcttaacc 26654376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 599
Target Start/End: Original strand, 30071505 - 30071579
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    |||||||||||||||| ||||||| ||| ||  | |||||||||||||| | |||||| | ||||||| ||||||    
T  30071505 ggtggtggtcggggttagaacctcaaaccttgtatatattatgcattgttcttatcaactaagttaagttcacga 30071579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 3650591 - 3650518
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacga 599  Q
    ||||||| ||||||| ||||| ||||| ||||| |||||||||||| |  ||| ||| ||||||||| ||||||    
T  3650591 gtggtggccggggtttgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctcacga 3650518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 10732774 - 10732839
Alignment:
Q  535 ggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||||||| |||| ||  | |||||||||||||| | || ||||||||||||| |||||||    
T  10732774 ggggttcgaaccttgaaccttgtatatattatgcattgttcataccaattgagttaagctcacgag 10732839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 12133527 - 12133604
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||||||||| ||||||  | ||||| ||||| |||| ||||||||| | |||||||| ||||||| ||||| ||||    
T  12133527 gtggtggtcggagttcgattcccgaaccttacatatataatgcattgttcatatcaattcagttaagttcacgtgaac 12133604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 18422443 - 18422520
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    |||||||| |||||| ||| | ||||| ||||| ||||||||||||||  ||||||| ||| ||||| | ||||||||    
T  18422443 gtggtggttggggtttgaatcccgaaccttacatatattatgcattgtttctatcaactgaattaagcttacgagaac 18422520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 26799254 - 26799189
Alignment:
Q  527 tggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaag 592  Q
    ||||||||||||||  |||| ||||| || || || |||||||||||||||| ||| |||||||||    
T  26799254 tggtggtcggggttttaaccccgaaccttgcatattttatgcattgtccctaccaactgagttaag 26799189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 539 - 597
Target Start/End: Complemental strand, 16209 - 16151
Alignment:
Q  539 ttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    |||||||||||||| ||||| |||||||||||||||| ||| || ||||||||| ||||    
T  16209 ttcgaacctcgaactttacatatattatgcattgtccttattaaatgagttaagttcac 16151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 597
Target Start/End: Complemental strand, 161213 - 161141
Alignment:
Q  525 ggtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcac 597  Q
    |||||||||||||||| ||||| ||||| || || || ||||||||||||| || ||| ||||||||| ||||    
T  161213 ggtggtggtcggggtttgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcac 161141  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 119639 - 119566
Alignment:
Q  527 tggtggtcg-gggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaaggtcacgag 600  Q
    ||||||||| |||||| ||| ||| ||||| || ||||||| ||||||||||||||| ||||||||| |||||||    
T  119639 tggtggtcgagggttc-aacatcggacattgcaaatattatacattgtccctatcaactgagttaagctcacgag 119566  T

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Target: scaffold1160 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 591
Target Start/End: Original strand, 1702 - 1767
Alignment:
Q  526 gtggtggtcggggttcgaacctcgaacattacagatattatgcattgtccctatcaattgagttaa 591  Q
    |||||||  ||||||| |||||||||| || || || |||||||||||||||| ||| ||||||||    
T  1702 gtggtggctggggttcaaacctcgaaccttgcatattttatgcattgtccctaccaactgagttaa 1767  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 603
Target Start/End: Original strand, 35946 - 35995
Alignment:
Q  554 ttacagatattatgcattgtccctatcaattgagttaaggtcacgagaac 603  Q
    ||||| ||||| ||||||||||||||||| |||| |||| ||||||||||    
T  35946 ttacatatattgtgcattgtccctatcaactgagctaagctcacgagaac 35995  T

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