View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_12 (Length: 415)
Name: NF4704_low_12
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 10803049 - 10803434
Alignment:
| Q |
17 |
agaatgccaagaggatccaatttgatttatataattgtgatatgcaagtataatttgttagaaaaatattgaagataataagcagtaaacataaaagaaa |
116 |
Q |
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| T |
10803049 |
agaatgtcaagaggatccaatttgatttatataattgtgatatgcaagtataatttgttagaaaaatattgaagataataagcagtaaacataaaagaaa |
10803148 |
T |
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| Q |
117 |
agaagaatctaagtgcaaaatcaattgagtaaatatagagcatgaataggcattgaacaatgtatttcaactatgaagctcattattgacatatattata |
216 |
Q |
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| T |
10803149 |
agaagaatctaagtgcagaatcaattgagtaaatatagagcatgaataggcattgaacagtgtatttcaactatgaagctcattattgacatatattata |
10803248 |
T |
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| Q |
217 |
ttcatacacatttctacaaatttattaacacaacacaaaaagaaaattcttcaaaatgttcaacatttacgaatgatcacgttgtcaggagttcgatctc |
316 |
Q |
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| T |
10803249 |
ttcatacacatttctacaaatttattaacacaacacaaaaagaaaattcttcaaaatgttcaacatttacgaatgatcacgttgtcaggagttcgatctc |
10803348 |
T |
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| Q |
317 |
agatataagtatacaaaagaacgtgtcaaggattagtccctcattttcggcagggtaattacgatgtaagattacctgaatggccta |
403 |
Q |
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| T |
10803349 |
agacatgtgtgtactaaagaacgtctcaagaattagtccctca-ttccggcagagagattacgatgtaagattacctgaatggccta |
10803434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 10794091 - 10794142
Alignment:
| Q |
185 |
aactatgaagctcattattgacatatattatattcatacacatttctacaaa |
236 |
Q |
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| T |
10794091 |
aactatgaagctcattattgacatatattatattcatacacatttctacaaa |
10794142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 10794057 - 10794093
Alignment:
| Q |
138 |
caattgagtaaatatagagcatgaataggcattgaac |
174 |
Q |
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| T |
10794057 |
caattgagtaaatatagagcatgaatagggattgaac |
10794093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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