View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_13 (Length: 412)
Name: NF4704_low_13
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 3554846 - 3555243
Alignment:
| Q |
1 |
caacatacaagactagaatttttcattcatgtcattcttattttccatgttgataccaaattcactcataaccaatggtttaaggttagaagcactcatg |
100 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3554846 |
caacatacaagacaagaatttttcattcatgtcagtcttattttccatgttgataccaaattcactcataaccaatggtttagggttagaaccactcatg |
3554945 |
T |
|
| Q |
101 |
agaaatcctgccttatcattcaaattattcattacattagcacattttttgttcaatggttgcttgtcccaatcacttcgttccccacttgaccatgcat |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3554946 |
agaaaccctgccttatcattcaaattattcattacattagcacattttttgttcaatggttgcttgtcccaatcacttcgttccccacttgaccatgcat |
3555045 |
T |
|
| Q |
201 |
aggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3555046 |
aggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaa |
3555145 |
T |
|
| Q |
301 |
gactagaacatctggatttgctttatgaacagttgtagctccttggctcatgtacttgtgccaattgttttcgttttgttttggacctcttagttcat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3555146 |
gactagaacatctggatttgctttatgaacagttgtagctccttggctcatgtacttgtgccaattgttttcgttttgttttggacctcttagttcat |
3555243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 55 - 398
Target Start/End: Original strand, 3527601 - 3527944
Alignment:
| Q |
55 |
accaaattcactcataaccaatggtttaaggttagaagcactcatgagaaatcctgccttatcattcaaattattcattacattagcacattttttgttc |
154 |
Q |
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|||||||||||||||||||||||| ||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527601 |
accaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagcacattttttgttc |
3527700 |
T |
|
| Q |
155 |
aatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttg |
254 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| |
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| T |
3527701 |
aatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttg |
3527800 |
T |
|
| Q |
255 |
tcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgta |
354 |
Q |
| |
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| |||||||||||||||||| ||||||| || |||||||||||||| || ||||||| |||||| |||| ||||| ||||| ||||||||||||||||| |
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| T |
3527801 |
ttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaactgttgttgctccttggctcatgta |
3527900 |
T |
|
| Q |
355 |
cttgtgccaattgttttcgttttgttttggacctcttagttcat |
398 |
Q |
| |
|
||| |||||| || || |||||| |||||||||||||||||| |
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| T |
3527901 |
cttctgccaactgcttatgttttgacttggacctcttagttcat |
3527944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 39 - 398
Target Start/End: Original strand, 3549293 - 3549656
Alignment:
| Q |
39 |
tattttccatgttgataccaaattcactcataaccaatggtttaaggttagaagcactcatgagaaatcctgccttatcattcaaattattcattacatt |
138 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||| ||| |||||||| ||||||||||||| |||||||| |||||||| |||||||||||| |
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| T |
3549293 |
tattttccatgtccataccaaattcagtcataaccaatggattagggttagaaccactcatgagaaaccctgccttgtcattcaatccattcattacatt |
3549392 |
T |
|
| Q |
139 |
a----gcacattttttgttcaatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctat |
234 |
Q |
| |
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| ||||||||||| |||| |||||||| |||||| || || ||| |||| ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
3549393 |
aattagcacattttttattcactggttgctcaatccaatcttttggtgaccctattgatcatgcataggaatgtacttcatacaccaatttgtctcctat |
3549492 |
T |
|
| Q |
235 |
gttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagtt |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||| |
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|
| T |
3549493 |
gttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaaaactagaacatttggatttgctttgtggactgtt |
3549592 |
T |
|
| Q |
335 |
gtagctccttggctcatgtacttgtgccaattgttttcgttttgttttggacctcttagttcat |
398 |
Q |
| |
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|| |||||||||||||||| |||| |||||||| | |||||| |||||||| |||||||| |
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| T |
3549593 |
gttactccttggctcatgtatttgtaccaattgtcattgttttgacctggacctcgtagttcat |
3549656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 55 - 398
Target Start/End: Original strand, 3532028 - 3532371
Alignment:
| Q |
55 |
accaaattcactcataaccaatggtttaaggttagaagcactcatgagaaatcctgccttatcattcaaattattcattacattagcacattttttgttc |
154 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||||||| |||||||| ||| |||||||||| |||||||||||| |||||||||| |||| |
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|
| T |
3532028 |
accaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccctatcattcaatccattcattacattggcacatttttggttc |
3532127 |
T |
|
| Q |
155 |
aatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttg |
254 |
Q |
| |
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||||||| | |||||| || || |||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| |
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| T |
3532128 |
aatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttg |
3532227 |
T |
|
| Q |
255 |
tcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgta |
354 |
Q |
| |
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| |||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||| ||||| ||||| ||||||||||||||||| |
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| T |
3532228 |
ttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgta |
3532327 |
T |
|
| Q |
355 |
cttgtgccaattgttttcgttttgttttggacctcttagttcat |
398 |
Q |
| |
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||| |||||||||| | |||||| ||||||||||||||||| |
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| T |
3532328 |
cttctgccaattgtctatgttttgacctggacctcttagttcat |
3532371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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