View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_15 (Length: 365)
Name: NF4704_low_15
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 4952195 - 4952545
Alignment:
| Q |
1 |
tcatcagaagtagttgagttgctgcttaaacatgatgggtaatggaagtttggtaagctgcctaaaagattatttatatggtaatttggaatttcattct |
100 |
Q |
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| T |
4952195 |
tcatcagaagtagttgagttgctgcttaaacatgatgggtaatggaagtttggtaagctgcctaaaagattatttatatggtaatttggaatttcattct |
4952294 |
T |
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| Q |
101 |
gtggtaagacaaagtttggttgaacttggaatgaattctcaggaggagttagataattgactcctctgatttctctaggaaccatggttagaattttatt |
200 |
Q |
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| T |
4952295 |
gtggtaagacaaagtttggttgaacttggaatgaattctcaggaggagttagataattgactcctctgatctcactaggaaccatggctagaattttatt |
4952394 |
T |
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| Q |
201 |
agactttgaggatattgttgg-aattaaacaatatgctaagagtttgatatgataagagaactgaagaatggtgtatgagaaatggattgaatttatagg |
299 |
Q |
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| T |
4952395 |
agactttgagggtattgttggaaattaattaatatgctaagagtttgatatgataagagaactgaagaatggtgtatgagaaatggattgaatttatagg |
4952494 |
T |
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| Q |
300 |
aaggtgatggcatgaaaagtgggaccagtttgaggaatgagacatatagtg |
350 |
Q |
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| T |
4952495 |
aaggtgatggcatgaaaagtgggaccagattgaggaatgagacatatagtg |
4952545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 33 - 345
Target Start/End: Complemental strand, 10483415 - 10483111
Alignment:
| Q |
33 |
tgatgggtaatggaagtttggtaagctgcctaaaagattatttatatggtaatttggaatttcattctgtggtaagacaaagtttggttgaacttggaat |
132 |
Q |
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| T |
10483415 |
tgatgggtaatggaagtttggtaaagtacctaaaatattacttagatggtaatttggaatttcattctgtggcaatacaaagtttggttgaacatggaat |
10483316 |
T |
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| Q |
133 |
gaattctcaggaggagttagataattgactcctctgatttctctaggaaccatggttagaattttattagactttgaggatattgttggaa-ttaaacaa |
231 |
Q |
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| T |
10483315 |
gaattctcaagaggagttagataattgactcctctcatctcactaggaaccatggctagaattttat---------agggtatagttggaaattaaataa |
10483225 |
T |
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| Q |
232 |
tatgctaagagtttgatatgataagagaactgaagaatggtgtatgagaaatggattgaatttataggaaggtgatggcatgaaaagtgggaccagtttg |
331 |
Q |
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| T |
10483224 |
tatgctaagagtttgatatgataagagaactgaagaatggtgtatgagaaatggattgaatttataggaaggtgatggtatgaaaagtgggaccagtttg |
10483125 |
T |
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| Q |
332 |
aggaatgagacata |
345 |
Q |
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| T |
10483124 |
aggaatgagacata |
10483111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10483477 - 10483443
Alignment:
| Q |
1 |
tcatcagaagtagttgagttgctgcttaaacatga |
35 |
Q |
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| T |
10483477 |
tcatcagaagtagttgagttgctacttaaacatga |
10483443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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