View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704_low_17 (Length: 361)

Name: NF4704_low_17
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704_low_17
NF4704_low_17
[»] chr6 (32 HSPs)
chr6 (31-159)||(5283432-5283560)
chr6 (30-159)||(5256370-5256499)
chr6 (31-159)||(5101038-5101166)
chr6 (31-159)||(5136139-5136267)
chr6 (41-160)||(5438968-5439087)
chr6 (36-159)||(5448561-5448684)
chr6 (42-159)||(5156233-5156350)
chr6 (43-160)||(5372056-5372173)
chr6 (31-159)||(5351347-5351475)
chr6 (31-159)||(5426847-5426975)
chr6 (38-159)||(5353083-5353204)
chr6 (44-160)||(5398006-5398122)
chr6 (42-160)||(5180993-5181111)
chr6 (42-159)||(5334137-5334254)
chr6 (43-159)||(5098170-5098286)
chr6 (197-354)||(5133790-5133947)
chr6 (74-149)||(2938899-2938974)
chr6 (31-120)||(5242774-5242863)
chr6 (219-354)||(5348393-5348528)
chr6 (218-327)||(5276674-5276783)
chr6 (31-120)||(5345973-5346062)
chr6 (41-146)||(5384148-5384253)
chr6 (226-354)||(5075616-5075744)
chr6 (215-318)||(5174844-5174947)
chr6 (225-354)||(5341682-5341811)
chr6 (31-122)||(5126889-5126980)
chr6 (219-329)||(5368442-5368552)
chr6 (227-288)||(5395033-5395094)
chr6 (219-288)||(5423735-5423804)
chr6 (225-294)||(5431395-5431464)
chr6 (31-120)||(5689165-5689254)
chr6 (218-354)||(5356501-5356637)
[»] chr3 (4 HSPs)
chr3 (38-159)||(47985613-47985734)
chr3 (38-159)||(47994900-47995021)
chr3 (38-159)||(48004187-48004308)
chr3 (38-159)||(48013472-48013593)
[»] chr5 (1 HSPs)
chr5 (41-159)||(8879486-8879604)
[»] chr4 (9 HSPs)
chr4 (77-158)||(4319523-4319604)
chr4 (216-288)||(4330468-4330540)
chr4 (86-158)||(4336904-4336976)
chr4 (215-260)||(4126416-4126461)
chr4 (94-149)||(4122874-4122929)
chr4 (215-260)||(4342920-4342965)
chr4 (86-158)||(4362554-4362626)
chr4 (86-158)||(4346358-4346430)
chr4 (215-355)||(4358388-4358528)
[»] chr2 (1 HSPs)
chr2 (31-159)||(22583507-22583638)
[»] scaffold0294 (1 HSPs)
scaffold0294 (41-146)||(8107-8212)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 5283560 - 5283432
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaag 130  Q
    |||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |||| | |||||| |||| |||||| |||||||||||    
T  5283560 tttgcttcctggtgatagttatccagattggttgacctttagttcagaaggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaag 5283461  T
Q  131 tcaatgatgtgcattgtctgtacttcaac 159  Q
    ||||||||||||||||||| |||||||||    
T  5283460 tcaatgatgtgcattgtctatacttcaac 5283432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 5256499 - 5256370
Alignment:
Q  30 atttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaa 129  Q
    ||||| |||||||||||||| ||||| ||||||| |||| ||| ||||||||||| ||||||| |||| ||||||| ||||| ||||||||||||||||     
T  5256499 atttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgat 5256400  T
Q  130 gtcaatgatgtgcattgtctgtacttcaac 159  Q
    |||||||||||||||||||| |||||||||    
T  5256399 gtcaatgatgtgcattgtctatacttcaac 5256370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 5101166 - 5101038
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaag 130  Q
    |||| |||||||||||||||||||| ||||||| ||||||   || |||||||| ||||||| |||  |||||||| |||||||||||||||||||||||    
T  5101166 tttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaag 5101067  T
Q  131 tcaatgatgtgcattgtctgtacttcaac 159  Q
     |||||||||||||||||| |||||||||    
T  5101066 acaatgatgtgcattgtctatacttcaac 5101038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 5136267 - 5136139
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaag 130  Q
    |||| |||||||||||||||||||| ||||||| ||||||   || |||||||| ||||||| |||  |||||||| |||||||||||||||||||||||    
T  5136267 tttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcgtaacttgaag 5136168  T
Q  131 tcaatgatgtgcattgtctgtacttcaac 159  Q
     |||||||||||||||||| |||||||||    
T  5136167 acaatgatgtgcattgtctatacttcaac 5136139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 5438968 - 5439087
Alignment:
Q  41 ggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgt 140  Q
    ||||||||||||||| ||||||| |||||||  ||||||||||| ||||||| |||| |||||||| |||||||||||||||| |||| |||| ||||||    
T  5438968 ggtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttcaagtccctcaagtggaagggcgtaatttgatgtcattgatgt 5439067  T
Q  141 gcattgtctgtacttcaact 160  Q
    ||||||||| | ||||||||    
T  5439068 gcattgtctattcttcaact 5439087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 5448561 - 5448684
Alignment:
Q  36 ttcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaat 135  Q
    |||| ||||||||||||||||||||||| |||||||  ||||||||||| ||||||| |||| |||||||| ||||||||| |||| | |||| |||| |    
T  5448561 ttcccggtgatagttatccagattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgtcaattgacgtcatt 5448660  T
Q  136 gatgtgcattgtctgtacttcaac 159  Q
    |||||||||||||| |||||||||    
T  5448661 gatgtgcattgtctatacttcaac 5448684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 5156350 - 5156233
Alignment:
Q  42 gtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtg 141  Q
    |||||||||||||| ||||||| |||| ||  ||||||||||| ||||| || ||| |||| ||| ||||||||||||||||||||||| ||||||||||    
T  5156350 gtgatagttatccaaattggttaacctataattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtg 5156251  T
Q  142 cattgtctgtacttcaac 159  Q
    |||||||| |||||||||    
T  5156250 cattgtctatacttcaac 5156233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 160
Target Start/End: Original strand, 5372056 - 5372173
Alignment:
Q  43 tgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgc 142  Q
    ||||||||||||| ||||||| |||| ||| ||||||||||| ||||| || ||| |||| ||| ||||||||||||||||||||||| |||| ||||||    
T  5372056 tgatagttatccaaattggttaacctatagttctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaattatgtgc 5372155  T
Q  143 attgtctgtacttcaact 160  Q
    | ||||||||||||||||    
T  5372156 aatgtctgtacttcaact 5372173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 5351347 - 5351475
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaag 130  Q
    |||| |||||||||||||||||||| ||||||| |||||||  || |||| ||| ||||| || ||| |||| ||| |||||||||||||| ||||||||    
T  5351347 tttgcttcctggtgatagttatccaaattggttaacctttatttcagaagtttcttctgtgaaatttgaagttcctcaagtggaagggcgtgacttgaag 5351446  T
Q  131 tcaatgatgtgcattgtctgtacttcaac 159  Q
     ||||||||||||| |||| |||||||||    
T  5351447 acaatgatgtgcatagtctatacttcaac 5351475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 5426847 - 5426975
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaag 130  Q
    |||| |||||||||| ||||||||| | ||||| |||| ||| ||||||||||| ||||||| |||| |||| ||  ||||||||||||||||| |||||    
T  5426847 tttgcttcctggtgacagttatccaaagtggttaacctatagttctgaaggttcttctgtaacttttcaagttccacaagtggaagggcgtaacctgaag 5426946  T
Q  131 tcaatgatgtgcattgtctgtacttcaac 159  Q
     |||| |||||||| |||| |||||||||    
T  5426947 acaattatgtgcatagtctatacttcaac 5426975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 5353204 - 5353083
Alignment:
Q  38 cctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 137  Q
    |||||||||||||||||| ||||||| |||||    ||||||||||| ||||||| |||| | ||||||   ||||||||||||||||||||| ||||||    
T  5353204 cctggtgatagttatccaaattggttaaccttctactctgaaggttcttctgtaacttttcatgtccctctggtggaagggcgtaacttgaagacaatga 5353105  T
Q  138 tgtgcattgtctgtacttcaac 159  Q
    |||||||| ||| ||| |||||    
T  5353104 tgtgcattatctatacgtcaac 5353083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 5398006 - 5398122
Alignment:
Q  44 gatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgca 143  Q
    |||||||||||| ||||||| || | ||| ||||| ||||| ||| ||| |||| |||| ||| | ||||||||||||||||||||| ||||||||||||    
T  5398006 gatagttatccaaattggttaacttatagttctgagggttcttctttaacttttgaagttcctcatgtggaagggcgtaacttgaagacaatgatgtgca 5398105  T
Q  144 ttgtctgtacttcaact 160  Q
    |||| | ||||||||||    
T  5398106 ttgtgtatacttcaact 5398122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 5181111 - 5180993
Alignment:
Q  42 gtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtg 141  Q
    |||||||||||||| ||||||| |||||||  ||||||||||| ||||||| |||| ||||||||   |||||||| |||||||||||| ||||||||      
T  5181111 gtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctttggtggaaggacgtaacttgaagacaatgatgct 5181012  T
Q  142 cattgtctgtacttcaact 160  Q
    | |||||| || |||||||    
T  5181011 cgttgtctataattcaact 5180993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 5334137 - 5334254
Alignment:
Q  42 gtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtg 141  Q
    |||||||||||||| ||||||| | || ||  ||||||||||| ||||| || ||| |||| ||| ||||||||||| ||||||||||| ||||||||||    
T  5334137 gtgatagttatccaaattggttaagctataattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggggtaacttgaagacaatgatgtg 5334236  T
Q  142 cattgtctgtacttcaac 159  Q
    |||| ||| || ||||||    
T  5334237 cattttctataattcaac 5334254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 5098170 - 5098286
Alignment:
Q  43 tgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgc 142  Q
    |||| |||||||||||||||| ||||||   ||||||||||| || |||| |||| |||| ||  |||||||||| |||| ||||||  |||||||||||    
T  5098170 tgatggttatccagattggttaacctttcattctgaaggttcttcggtaacttttcaagttccccaagtggaaggccgtagcttgaaaacaatgatgtgc 5098269  T
Q  143 attgtctgtacttcaac 159  Q
    ||||||| |||||||||    
T  5098270 attgtctatacttcaac 5098286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 5133947 - 5133790
Alignment:
Q  197 gtttgggagcaaactatgggacaagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaa 296  Q
    |||||||||| || | | || |||||| | ||||||||||||||| ||||||||||   ||||| ||||| |||||||||||||| |||||| || ||||    
T  5133947 gtttgggagcgaaattttggtcaagtggaattacaagaacaacttctgtttgatatcaacaaagaaatgacaactaagatacaaaacattgagtcaggaa 5133848  T
Q  297 aagtaattttaagggatagactccgccataaaaaagtgcttcttgttcttgatgatgt 354  Q
    ||   ||||||| |||||||||| | ||||||| |||  |  |||| |||||||||||    
T  5133847 aaaatattttaaaggatagactctggcataaaagagtattaattgtacttgatgatgt 5133790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 2938899 - 2938974
Alignment:
Q  74 tctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtct 149  Q
    |||||| |||| ||||| || ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  2938899 tctgaatgttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtct 2938974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 5242863 - 5242774
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcg 120  Q
    |||| |||||||||| ||||||||||||||||| |||||    ||||||||||| ||||| | |||| |||||||| |||||||||||||    
T  5242863 tttgcttcctggtgacagttatccagattggttaaccttcgattctgaaggttcttctgttacttttgaagtccctcaagtggaagggcg 5242774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 5348393 - 5348528
Alignment:
Q  219 aagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagact 318  Q
    ||||| |||||||| |||||||| ||||||| || | |||||  |||| ||| || ||||||||||||||    |||||| | || |||| |||||||||    
T  5348393 aagtgaatttacaaaaacaacttctgtttgacatctgcaaagatatgacaaccaatatacaaagcattgaaagcggaaaaatcatattaaaggatagact 5348492  T
Q  319 ccgccataaaaaagtgcttcttgttcttgatgatgt 354  Q
    | ||||||||| ||| ||  ||||||||||||||||    
T  5348493 ctgccataaaagagtactaattgttcttgatgatgt 5348528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 327
Target Start/End: Original strand, 5276674 - 5276783
Alignment:
Q  218 caagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagac 317  Q
    |||||| |||||||| |||||||| | | |||||| || ||||||| |   || ||||||||||| |||||||| ||||||||||| |||| ||||||||    
T  5276674 caagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagac 5276773  T
Q  318 tccgccataa 327  Q
    | || |||||    
T  5276774 ttcgtcataa 5276783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 5345973 - 5346062
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcg 120  Q
    |||| |||||||||| ||||||||||||||||| || || |  ||||||||||| ||||| | |||| |||| ||| |||||||||||||    
T  5345973 tttgcttcctggtgacagttatccagattggttaactttcaattctgaaggttcttctgttacttttgaagttcctcaagtggaagggcg 5346062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 5384148 - 5384253
Alignment:
Q  41 ggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgt 140  Q
    ||||||||||||||| | ||||| | ||| | || ||| ||||| ||||||| |||||| | |||| ||||||||| || |||||| |||||| ||||||    
T  5384148 ggtgatagttatccaaactggttaagcttcaaatgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcattgatgt 5384247  T
Q  141 gcattg 146  Q
    ||||||    
T  5384248 gcattg 5384253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 5075744 - 5075616
Alignment:
Q  226 tttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagactccgccat 325  Q
    |||||||||||||||| | |||||||||| |||||  | |||||||||||||| ||| ||||| || ||||||   || |||| |||||||||  | |||    
T  5075744 tttacaagaacaacttctttttgatatttgcaaagatacgaaaactaagatacgaagtattgagtcgggaaaaactatattaatggatagactatgtcat 5075645  T
Q  326 aaaaaagtgcttcttgttcttgatgatgt 354  Q
    |||| | | ||| |||| |||||||||||    
T  5075644 aaaagaattcttattgtacttgatgatgt 5075616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 5174844 - 5174947
Alignment:
Q  215 ggacaagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggata 314  Q
    ||||||||| |||||||| |||||||| | | |||||| || ||||||| |   || ||||||||||| |||||||| ||||||||| | |||| |||||    
T  5174844 ggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtattattaaaggata 5174943  T
Q  315 gact 318  Q
    ||||    
T  5174944 gact 5174947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 354
Target Start/End: Original strand, 5341682 - 5341811
Alignment:
Q  225 atttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagactccgcca 324  Q
    |||||||||||| |||| | || ||||| | ||||| ||  | ||| |||||||||| |||||| || |||||||| || |||| |||||||||| | ||    
T  5341682 atttacaagaacgacttcttttcgatatctgcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttatattaaaggatagactctgtca 5341781  T
Q  325 taaaaaagtgcttcttgttcttgatgatgt 354  Q
    ||| ||| | |||||||| || ||||||||    
T  5341782 taagaaaatacttcttgtactagatgatgt 5341811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 5126980 - 5126889
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgta 122  Q
    |||| |||||||||||||||||||| |||||||  |||| |  || |||||||| || |||| |||| |||| ||| ||||| |||||||||    
T  5126980 tttgcttcctggtgatagttatccatattggttagccttcaactccgaaggttcttcggtaacttttgaagtacctcaagtgaaagggcgta 5126889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 329
Target Start/End: Original strand, 5368442 - 5368552
Alignment:
Q  219 aagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagact 318  Q
    ||||| ||||||||||||||||| | |||||||| | |||||  |||  ||| || || ||||||||||| |  |||||| | || |||| |||||||||    
T  5368442 aagtgaatttacaagaacaacttctctttgatatctgcaaagatatggcaaccaaaattcaaagcattgaatgcggaaaaatcatattaaaggatagact 5368541  T
Q  319 ccgccataaaa 329  Q
    | |||||||||    
T  5368542 ctgccataaaa 5368552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 5395033 - 5395094
Alignment:
Q  227 ttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattga 288  Q
    |||||| |||||||| | |||||||||| ||||| || ||| ||||||||||||| ||||||    
T  5395033 ttacaaaaacaacttctctttgatatttgcaaagaaacgaagactaagatacaaaacattga 5395094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 5423735 - 5423804
Alignment:
Q  219 aagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattga 288  Q
    ||||| ||||||||||||||||| | |||||||| | |||||  |||| ||| || ||||||||||||||    
T  5423735 aagtgaatttacaagaacaacttctctttgatatatgcaaagatatgacaaccaaaatacaaagcattga 5423804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 5431395 - 5431464
Alignment:
Q  225 atttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctgg 294  Q
    ||||||||||||||||| | | |||||| |||| ||||| ||  || ||||||||||| |||||||||||    
T  5431395 atttacaagaacaacttctatctgatatcttcagaggaacgacgaccaagatacaaagtattgattctgg 5431464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 5689254 - 5689165
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcg 120  Q
    |||| ||||| ||||||||| |||||||||||| ||||| |  |  |||||||| || ||||  ||| |||||||| |||||||||||||    
T  5689254 tttgtttcctagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaagggcg 5689165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 354
Target Start/End: Complemental strand, 5356637 - 5356501
Alignment:
Q  218 caagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagac 317  Q
    |||||| ||||||||||||||||| | | |||||| | |||||  | || ||| || ||||||||||||||   ||||||| | || |||| ||||||||    
T  5356637 caagtgaatttacaagaacaacttctctctgatatctgcaaagacacgacaaccaaaatacaaagcattgaaaatggaaaaatcatattaaaggatagac 5356538  T
Q  318 tccgccataaaaaagtgcttcttgttcttgatgatgt 354  Q
    |  | ||||||| ||| ||  |||| |||||||||||    
T  5356537 tttgtcataaaagagtactaattgtacttgatgatgt 5356501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 47985734 - 47985613
Alignment:
Q  38 cctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 137  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  47985734 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 47985635  T
Q  138 tgtgcattgtctgtacttcaac 159  Q
    |||||||||||| |||||||||    
T  47985634 tgtgcattgtctatacttcaac 47985613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 47995021 - 47994900
Alignment:
Q  38 cctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 137  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  47995021 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 47994922  T
Q  138 tgtgcattgtctgtacttcaac 159  Q
    |||||||||||| |||||||||    
T  47994921 tgtgcattgtctatacttcaac 47994900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 48004308 - 48004187
Alignment:
Q  38 cctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 137  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  48004308 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 48004209  T
Q  138 tgtgcattgtctgtacttcaac 159  Q
    |||||||||||| |||||||||    
T  48004208 tgtgcattgtctatacttcaac 48004187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 48013593 - 48013472
Alignment:
Q  38 cctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 137  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  48013593 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 48013494  T
Q  138 tgtgcattgtctgtacttcaac 159  Q
    |||||||||||| |||||||||    
T  48013493 tgtgcattgtctatacttcaac 48013472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 8879486 - 8879604
Alignment:
Q  41 ggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgt 140  Q
    ||||||| ||||||| ||||||| || || || | ||||||| | | ||||| ||||||||| ||| |||| |||||| | ||||||||||| |||||||    
T  8879486 ggtgataattatccaaattggttaactttcagttgtgaaggtccttgtgtaacttttaaagttcctcaagttgaagggagaaacttgaagtcgatgatgt 8879585  T
Q  141 gcattgtctgtacttcaac 159  Q
    ||||||||| ||| |||||    
T  8879586 gcattgtctatacatcaac 8879604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 4319604 - 4319523
Alignment:
Q  77 gaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaa 158  Q
    |||||||| ||||||| |||| |||||||| |||||||||| |||| ||||||| |||| ||||||||||||| | ||||||    
T  4319604 gaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatgtgcattgtctattcttcaa 4319523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 4330468 - 4330540
Alignment:
Q  216 gacaagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattga 288  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||| ||| | ||| |||||||||| ||||||    
T  4330468 gacaagtctatttacaagaacaacttatgtatgatattttcaaagaaatcacaaccaagatacaaaacattga 4330540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 4336904 - 4336976
Alignment:
Q  86 tctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaa 158  Q
    |||||||||||| |||||||| | |||||||| |||| ||||||| |||||||||||||||||| | ||||||    
T  4336904 tctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagacaatgatgtgcattgtctattcttcaa 4336976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 4126461 - 4126416
Alignment:
Q  215 ggacaagtgtatttacaagaacaacttttgtttgatattttcaaag 260  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  4126461 ggacaagtgtatttacaagaacaacttatgtatgatattttcaaag 4126416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 4122929 - 4122874
Alignment:
Q  94 ttttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtct 149  Q
    |||| |||||||| |||||||||| |||| ||||||| ||||||||||||||||||    
T  4122929 ttttgaagtccctcaagtggaaggacgtagcttgaagacaatgatgtgcattgtct 4122874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 4342920 - 4342965
Alignment:
Q  215 ggacaagtgtatttacaagaacaacttttgtttgatattttcaaag 260  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||    
T  4342920 ggacaagtgtatttacaagaacaacttatgcatgatattttcaaag 4342965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 4362554 - 4362626
Alignment:
Q  86 tctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaa 158  Q
    ||||||| |||| |||||||| ||||||||||  ||| ||||||| |||| ||||||||||||| | ||||||    
T  4362554 tctgtaatttttgaagtccctcaagtggaaggatgtagcttgaagacaataatgtgcattgtctattcttcaa 4362626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 4346358 - 4346430
Alignment:
Q  86 tctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaa 158  Q
    |||||||  ||| |||||||| |||||||||| | || ||||||| |||| ||||||||||||| | ||||||    
T  4346358 tctgtaatctttgaagtccctcaagtggaaggacatagcttgaagacaataatgtgcattgtctattcttcaa 4346430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 355
Target Start/End: Original strand, 4358388 - 4358528
Alignment:
Q  215 ggacaagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggata 314  Q
    |||||| ||||||||||||||| |||| ||  ||||||||| ||||  |  | ||| ||||||||||||||||| || ||||||   || |||| ||| |    
T  4358388 ggacaattgtatttacaagaacgacttatgaatgatattttgaaagacaccacaaccaagatacaaagcattgaatcaggaaaatctatattaaaggaaa 4358487  T
Q  315 gactccgccataaaaaagtgcttcttgttcttgatgatgtc 355  Q
    ||||  | ||||||| ||| ||| |||| ||||| ||||||    
T  4358488 gactgtgtcataaaagagtacttattgtacttgacgatgtc 4358528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 22583638 - 22583507
Alignment:
Q  31 tttgattcctggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaag 130  Q
    |||| |||||||||||| ||||||| ||||||| | ||| |  |   ||||||| ||||||| |||||||||||||| |||| |||||||||  ||||||    
T  22583638 tttgcttcctggtgataattatccaaattggttaaacttcaattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatgttgaag 22583539  T
Q  131 tc---aatgatgtgcattgtctgtacttcaac 159  Q
    ||   |||||| |||||||||| | |||||||    
T  22583538 tcaataatgatctgcattgtctattcttcaac 22583507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 8212 - 8107
Alignment:
Q  41 ggtgatagttatccagattggttgacctttagatctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgt 140  Q
    ||||||||||||||| | ||||| | ||| |  | ||| ||||| ||||||| |||||| | |||| ||||||||| || |||||| |||||| ||||||    
T  8212 ggtgatagttatccaaactggttaagcttcaattgtgatggttcttctgtaatttttaatgcccctcaagtggaagagcataacttaaagtcattgatgt 8113  T
Q  141 gcattg 146  Q
    ||||||    
T  8112 gcattg 8107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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